Hi R usrs,
I want to build R-2.10.0 on HP-UX, but I got following error message:
ld: Unsatisfied symbol "zgemm" in file
CHOLMOD.a[cholmod_l_super_numeric.o]
ld: Unsatisfied symbol "zgemv" in file
CHOLMOD.a[cholmod_l_super_solve.o]
ld: Unsatisfied symbol "zherk" in file
CHOLMOD.a[cholmod_l_super_numeric.o]
ld: Unsatisfied symbol "ztrsm" in file
CHOLMOD.a[cholmod_l_super_numeric.o]
ld: Unsatisfied symbol "ztrsv" in file
CHOLMOD.a[cholmod_l_super_solve.o]
ld: Unsatisfied symbol "dgemm" in file
CHOLMOD.a[cholmod_l_super_numeric.o]
ld: Unsatisfied symbol "dgemv" in file
CHOLMOD.a[cholmod_l_super_solve.o]
ld: Unsatisfied symbol "main" in file <no file>
ld: Unsatisfied symbol "alloca" in file CHMfactor.o
ld: Unsatisfied symbol "dpotrf" in file
CHOLMOD.a[cholmod_l_super_numeric.o]
ld: Unsatisfied symbol "zpotrf" in file
CHOLMOD.a[cholmod_l_super_numeric.o]
ld: Unsatisfied symbol "dsyrk" in file
CHOLMOD.a[cholmod_l_super_numeric.o]
ld: Unsatisfied symbol "dtrsm" in file
CHOLMOD.a[cholmod_l_super_numeric.o]
ld: Unsatisfied symbol "dtrsv" in file
CHOLMOD.a[cholmod_l_super_solve.o]
14 errors.
gmake[3]: *** [Matrix.sl] Error 1
gmake[3]: Leaving directory
`/rnd/homes/jixu/tmp/R-2.10.1/src/library/Recommended/Matrix/src'
ERROR: compilation failed for package 'Matrix'
* removing '/rnd/homes/jixu/tmp/R-2.10.1/library/Matrix'
gmake[2]: *** [Matrix.ts] Error 1
gmake[2]: Leaving directory
`/rnd/homes/jixu/tmp/R-2.10.1/src/library/Recommended'
gmake[1]: *** [recommended-packages] Error 2
gmake[1]: Leaving directory
`/rnd/homes/jixu/tmp/R-2.10.1/src/library/Recommended'
gmake: *** [stamp-recommended] Error 2
Any help or suggestions would be appreciated.
In addition I use below parameter:
export CC="cc"
export CFLAGS="-AC99 +DD64"
export CXX="aCC"
export CXXFLAGS="-b +DD64"
export F77="f90"
export FFLAGS="+DD64"
export LDFLAGS="-L/opt/fortran90/lib -L/usr/lib/hpux64"
./configure --prefix=$/usr/homes/myrhome --enable-R-shlib --with-x
--with-readline=no
Thanks in advance,
Xu Jin
_________________________________________________________________
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Prof Brian Ripley
2010-Jan-18 09:44 UTC
[R] A question about build R-2.10.0 on HP-UX ia64 server.
Please ask about installing on unusual platforms on the R-devel list, with reasonably complete output (we have not got the command that failed, do not know which compilers there are ...). You might want to talk directly to the Matrix authors, since this is a failure to install Matrix right at the end of the R installation process. Also, no one is going to be interested in helping you with an obsolete version of R: please try R 2.10.1 or R-patched when you report on R-devel. It is several years since we have had any report about R on HP-UX, and the notes on that platform last appeared in the R-admin manual for R 2.9.2. On Mon, 18 Jan 2010, ???? wrote:> > Hi R usrs, > > > > I want to build R-2.10.0 on HP-UX, but I got following error message: > > > > ld: Unsatisfied symbol "zgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] > ld: Unsatisfied symbol "zgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] > ld: Unsatisfied symbol "zherk" in file CHOLMOD.a[cholmod_l_super_numeric.o] > ld: Unsatisfied symbol "ztrsm" in file CHOLMOD.a[cholmod_l_super_numeric.o] > ld: Unsatisfied symbol "ztrsv" in file CHOLMOD.a[cholmod_l_super_solve.o] > ld: Unsatisfied symbol "dgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] > ld: Unsatisfied symbol "dgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] > ld: Unsatisfied symbol "main" in file <no file> > ld: Unsatisfied symbol "alloca" in file CHMfactor.o > ld: Unsatisfied symbol "dpotrf" in file CHOLMOD.a[cholmod_l_super_numeric.o] > ld: Unsatisfied symbol "zpotrf" in file CHOLMOD.a[cholmod_l_super_numeric.o] > ld: Unsatisfied symbol "dsyrk" in file CHOLMOD.a[cholmod_l_super_numeric.o] > ld: Unsatisfied symbol "dtrsm" in file CHOLMOD.a[cholmod_l_super_numeric.o] > ld: Unsatisfied symbol "dtrsv" in file CHOLMOD.a[cholmod_l_super_solve.o] > 14 errors. > gmake[3]: *** [Matrix.sl] Error 1 > gmake[3]: Leaving directory `/rnd/homes/jixu/tmp/R-2.10.1/src/library/Recommended/Matrix/src' > ERROR: compilation failed for package 'Matrix' > * removing '/rnd/homes/jixu/tmp/R-2.10.1/library/Matrix' > gmake[2]: *** [Matrix.ts] Error 1 > gmake[2]: Leaving directory `/rnd/homes/jixu/tmp/R-2.10.1/src/library/Recommended' > gmake[1]: *** [recommended-packages] Error 2 > gmake[1]: Leaving directory `/rnd/homes/jixu/tmp/R-2.10.1/src/library/Recommended' > gmake: *** [stamp-recommended] Error 2 > > > > Any help or suggestions would be appreciated. > > > > In addition I use below parameter: > > export CC="cc" > export CFLAGS="-AC99 +DD64" > export CXX="aCC" > export CXXFLAGS="-b +DD64" > export F77="f90" > export FFLAGS="+DD64" > export LDFLAGS="-L/opt/fortran90/lib -L/usr/lib/hpux64" > > > > ./configure --prefix=$/usr/homes/myrhome --enable-R-shlib --with-x --with-readline=no > > > > Thanks in advance, > > Xu Jin > > _________________________________________________________________ > [[elided Hotmail spam]] > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595