search for: lrblas

...m config.log, it seems configure is trying to link with libRblas when testing for LAPACK -- but that has not been built yet: configure:37825: checking for zgeev_ configure:37889: gcc -std=gnu99 -o conftest -g -O2 -fpic -I/usr/local/include -L/usr/local/lib64 conftest.c -L$(R_HOME)/lib$(R_ARCH) -lRblas -lg2c -lm -ldl -lm >&5 /usr/bin/ld: cannot find -lRblas [...] configure:37924: checking for zgeev_ in -L/site/intel/cmkl/8.1/lib/em64t -lmkl_lapack64 -lmkl configure:37962: gcc -std=gnu99 -o conftest -g -O2 -fpic -I/usr/local/include -L/usr/local/lib64 conftest.c -L/site/intel/cmkl/8.1/...

...glob.o malloc.o ../main/libmain.a ../appl/libappl.a ../nmath/libnmath.a getline/gl.a ../extra/xdr/libxdr.a ../extra/pcre/libpcre.a ../extra/bzip2/libbz2.a ../extra/intl/libintl.a ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/tre/libtre.a ../extra/xz/liblzma.a dllversion.o -L. -lgfortran -lRblas -L../../bin/x64 -lRzlib -lRgraphapp -lRiconv -lcomctl32 -lversion c:/rtools/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.5.2/../../../../x86_64-w64-mingw32/bin/ld.exe: skipping incompatible ./libRblas.dll.a when searching for -lRblas c:/rtools/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/4.5.2/../../...

...c -O3 -g -std=gnu99 -c ppsum.c -o ppsum.o gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include -fpic -O3 -g -std=gnu99 -c tsutils.c -o tsutils.o gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o tseries.so arma.o bdstest.o boot.o dsumsl.o garch.o ppsum.o tsutils.o -L/usr/lib/R/lib -lRblas -lgfortran -lm -lgcc_s -lgfortran -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libRblas.so when searching for -lRblas /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libRblas.so when searching for -lRblas /usr/bin/ld: cannot find -lRblas collect2: ld returned...

...ith 2 dual-core Xeon processors running Red Hat EL5. I would like to build R 2.6.1 with lots of debugging and profiling options, and link it to the processor-specific Intel MKL blas. The problem is that after I compile R, and do R CMD config BLAS_LIBS, the response is -L/usr/local/lib64/R/lib -lRblas. This tells me that R is not linked to the Intel BLAS at all. My config.site file for R is: #! /bin/sh R_PAPERSIZE=letter CFLAGS="-g -O2 -p -pg" CPPFLAGS="-I/opt/intel/mkl/10.0.1.014/include -I/usr/include -I/usr/local/include" LIBnn=lib64 BLAS_LIBS="-L/opt/intel/mkl/1...

...llowing command, but got warnings! install.packages("rstan", dependencies = TRUE, repos = "http://cran.r-project.org/") ... g++ -m64 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lgfortran collect2: error: ld returned 1 exit status make: *** [RcppEigen.so] Error 1 ERROR: compilation failed for package 'RcppEigen' * removing '/usr/lib64/R/library/RcppEigen' ... ** package 'RCurl' successf...

...=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mhroc_prop.so mhroc_prop.o mvndstpack.o -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRlapack -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRblas -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.0 -lgfortran -lgcc_s.10.4 -lSystemStubs -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.0 -lgfortran -lgcc_s.10.4 -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R Any ideas? Thank you, Richard Zur

....o rlocale.o saveload.o scan.o seq.o > serialize.o size.o sort.o source.o split.o sprintf.o startup.o > subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o > version.o vfonts.o xxxpr.o mkdtemp.o ../unix/libunix.a > ../appl/libappl.a ../nmath/libnmath.a -L../../lib -lRblas > -L/usr/local/encap/gf7764-3.4.3+2/lib/gcc/sparc64-sun-solaris2.9/3.4.3 > -L/usr/ccs/bin/sparcv9 -L/usr/ccs/bin -L/usr/ccs/lib > -L/usr/local/encap/gf7764-3.4.3+2/lib/sparcv9 > -L/usr/local/encap/gf7764-3.4.3+2/lib -lg2c -lm -lgcc_s > ../extra/zlib/libz.a ../extra/bzip2/libbz2.a .....

Full_Name: Bob Bownes Version: 2.9.2 OS: Solaris 10 Submission from: (NULL) (164.55.254.106) The sed lines in src/unix/Makefile confuse the grep distributed with Solaris that gets configured by ./configure. Switching from a separator of ':' to a separator of ',' fixes the problem. 76,77c76,77 < @$(SED) -e "s:@rhome:$(rhome):" -e

...run.o shext.o sys-win32.o system.o dos_wglob.o > dllversion.o ../main/libmain.a ../appl/libappl.a ../nmath/libnmath.a > getline/gl.a ../extra/xdr/libxdr.a ../extra/intl/libintl.a > ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/tre/libtre.a > -fopenmp -L. -lgfortran -lquadmath -lRblas -L../../lib -lRgraphapp -lRiconv > -lcomctl32 -lversion -L"D:/R64/extsoft"/lib/x64 -lpcre -lz -lbz2 -llzma > -L"D:/home/ICU"/lib/x64 -lsicuin -lsicuuc -lsicudt -lstdc++ > D:/Rtools/mingw_64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.3/../../../../x86_64-w64-mingw32/bin/ld.ex...

...h settings and find a solution for my self ! But here another problem: ...modify without the MkRules in my current binary R.1.6.1\src\gnuwin32 C:\DataMining\rw1061\library>Rcmd INSTALL Oop make: Entering directory `/cygdrive/c/dataMining/rw1061/src/gnuwin32' make DLLNM= FLIBS="-lg2c -lRblas" \ -C C:/DataMining/rw1061/library/Oop PKG=Oop RHOME=c:/dataMining/rw1061 RLIB=C:/dataMining/rw1061/library RVER=1.6.1 \ -f c:/dataMining/rw1061/src/gnuwin32/MakePkg make: Entering an unknown directory make: *** C:/DataMining/rw1061/library/Oop: No such file or directory. Stop. make: Leavi...

...r-project.org/R/trunk [atxi@aquario R]$ cd trunk [atxi@aquario R]$ ./tools/rsync-recommended [atxi@aquario R]$ ./configure --enable-R-shlib [atxi@aquario R]$ make I'm getting the following error: gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -L/usr/local/lib -o R.bin Rmain.o -L../../lib -lR -lRblas ../../lib/libR.so: undefined reference to `SHORT_VEC_LENGTH' collect2: ld returned 1 exit status This does not seem to be a missing dependency, as the complaint is about something included in the R code. I had previously successfully installed R-devel using the exact same commands on the same...

...ar*? splmDIC.cpp:430: warning: deprecated conversion from string constant to ?char*? splmDIC.cpp:431: warning: deprecated conversion from string constant to ?char*? g++-4.3 -shared -L/usr/local/lib -o splmDIC.so splmDIC.o covmodel.o util.o -L/usr/local/lib/R/lib -lRlapack -L/usr/local/lib/R/lib -lRblas -L/usr/lib/gcc/i486-linux-gnu/3.4.6 -lg2c -lm -lgcc_s Thanks for your time. Kind regards- Andy -- Andrew Finley, PhD Natural Resources Building Michigan State University East Lansing, MI 48824-1222 Phone: 517-432-7219 Fax: 517-432-1143 web: http://blue.for.msu.edu

...ude -ID:/hli/Programfiles/R-3.2.2/inc lude/i386 -ID:/hli/Programfiles/R-3.2.2/library/Rcpp/include -ID:/hli/Programfil es/R-3.2.2/library/RInside/include -O2 -Wall -mtune=core2 -Wall -s rinside_sam ple0.cpp -LD:/hli/Programfiles/R-3.2.2/bin/i386 -lR -lm -LD:/hli/Programfiles /R-3.2.2/bin/i386 -lRblas -LD:/hli/Programfiles/R-3.2.2/bin/i386 -lRlapack "D:/h li/Programfiles/R-3.2.2/library/RInside/lib/i386/libRInside.a" -o rinside_sampl e0 rinside_sample0.cpp:1: error: bad value (core2) for -mtune= switch make: *** [rinside_sample0] Error 1 Dose anyone know how to fix this error? Th...

...in separate f77 files. I find that libR.a appears to contain the symbols but there is no libR.so I'm compiling earth using: gcc -DSTANDALONE -DMAIN -Wall -pedantic -Wextra -O3 -std=gnu99 -I/home/badbear/Documents/code/localpackages/lib64/R/include -I../src/tests ../src/earth.c -L. -lblas -lRblas -lRlapack -o earthMain (I have placed libRblas.so and libRlapack.so in the local folder because I was having problems with linking to them in another location) Do I need to create a shared-object from libR.a? Do I need to link agains libR.a directly? Many thanks, Casper

.../RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c galgo_fitnesses.c -o galgo_fitnesses.o gcc -m32 -shared -s -static-libgcc -o galgo.dll tmp.def galgoDistance.o galgo_fitnesses.o -LC:/PROGRA~1/R/R-30~1.0/bin/i386 -lRlapack -LC:/PROGRA~1/R/R-30~1.0/bin/i386 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/R/R-30~1.0/bin/i386 -lR galgo_fitnesses.o:galgo_fitnesses.c:(.text+0xda1): undefined reference to `La_svd' collect2: ld returned 1 exit status specifically from the error I und...

...e/apps/R-2.15.3/library/Matrix/include" -I"/share/apps/R-2.15.3/library/stats/include" -fpic -g -O2 -c local_stubs.c -o local_stubs.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o lme4.so init.o lmer.o local_stubs.o -L/share/apps/R-2.15.3/lib -lRlapack -L/share/apps/R-2.15.3/lib -lRblas -lgfortran -lm /usr/bin/ld: cannot find -lgfortran collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package 'lme4' * removing '/share/apps/R-2.15.3/library/lme4' The downloaded source packages are in '/tmp/RtmpcTIcHw...

Hi, While I was trying to build R 2.5.0 src on Red Hat Enterprise Linux ES release 4 (Nahant Update 4) Kernel 2.6.9-42.ELsmp on an x86_64 The following errors occurred: gcc -std=gnu99 -shared -L/usr/local/lib64 -o lapack.so Lapack.o -L../../../lib -lRlapack -L../../../lib -lRblas -lg2c -lm -lgcc_s /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a(s_cat.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a: could not read symbols: Bad value collec...

...ob.o malloc.o ../main/libmain.a ../appl/libappl.a ../nmath/libnmath.a getl ine/gl.a ../extra/xdr/libxdr.a ../extra/pcre/libpcre.a ../extra/bzip2/libbz2.a . ./extra/intl/libintl.a ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/t re/libtre.a ../extra/xz/liblzma.a dllversion.o -L. -lgfortran -lRblas -L../../bi n -lRzlib -lRgraphapp -lRiconv -lcomctl32 -lversion cp R.dll ../../bin x86_64-w64-mingw32-gfortran -O3 -c blas.f -o blas.o x86_64-w64-mingw32-gfortran -O3 -c cmplxblas.f -o cmplxblas.o -------- Building ../../../bin/Rblas.dll -------- x86_64-w64-mingw32-gcc -std=gnu99 -shared -o ../.....

...I am at a loss as to why this happening. The specific error is brought below. Thank you, Avi F:/R/Rtools/gcc492_64/bin/windres -i dllversion.rc -o dllversion.o F:/R/Rtools/gcc492_64/bin/gcc -std=gnu99 -shared -s -o lapack.dll lapack.def Lapack.o dllversion.o -L../../../bin/x64 -lRlapack -lRblas -lR cp lapack.dll ../../../modules/x64/lapack.dll building package 'base' building package 'tools' making text.d from text.c C:/Rtools/gcc492_64/bin/gcc: not found make[4]: *** [text.d] Error 127 make[3]: *** [mksrc-win2] Error 1 make[2]: *** [all] Error 2 make[1]: *** [R] Error 1 m...

...intValue( x_r ); printf( "OK\n" ); PROTECT( y_r = mkChar( y ) ); Rf_PrintValue( y_r ); printf( "OK\n" ); UNPROTECT( 2 ); return 0; } I compile this code with: % env -i PATH=/bin:/usr/bin ./myR/bin/R CMD LINK gcc -g -I./R-2.9.0/src/include -L./myR/lib64/R/lib -lR -lRblas bug.c -o bug A run looks like this: % env -i PATH=/bin:/usr/bin R_HOME=$(./myR/bin/R RHOME) ./bug -q --vanilla <CHARSXP: "foo"> OK <CHARSXP: "coverage"> *** caught segfault *** address 0x6c6c756e2e8d, cause 'memory not mapped' Possible actions: 1: abort...