xingwang ye
2006-Jul-28 14:04 UTC
[R] could someone help me to install packages "gam" (ubuntu 6.06)
> install.packages("gam")Warning in install.packages("gam") : argument 'lib' is missing: using /usr/local/lib/R/site-library --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/gam_0.97.tar.gz' Content type 'application/x-gzip' length 89613 bytes opened URL =================================================downloaded 87Kb * Installing *source* package 'gam' ... ** libs g77 -fpic -g -O2 -c backfit.f -o backfit.o g77 -fpic -g -O2 -c backlo.f -o backlo.o g77 -fpic -g -O2 -c bsplvd.f -o bsplvd.o g77 -fpic -g -O2 -c bvalue.f -o bvalue.o g77 -fpic -g -O2 -c bvalus.f -o bvalus.o g77 -fpic -g -O2 -c linear.f -o linear.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c loessc.c -o loessc.o g77 -fpic -g -O2 -c loessf.f -o loessf.o g77 -fpic -g -O2 -c lo.f -o lo.o g77 -fpic -g -O2 -c qsbart.f -o qsbart.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c sbart.c -o sbart.o g77 -fpic -g -O2 -c sgram.f -o sgram.o g77 -fpic -g -O2 -c sinerp.f -o sinerp.o g77 -fpic -g -O2 -c splsm.f -o splsm.o g77 -fpic -g -O2 -c sslvrg.f -o sslvrg.o g77 -fpic -g -O2 -c stxwx.f -o stxwx.o gcc -shared -o gam.so backfit.o backlo.o bsplvd.o bvalue.o bvalus.o linear.o loessc.o loessf.o lo.o qsbart.o sbart.o sgram.o sinerp.o splsm.o sslvrg.o stxwx.o -lblas-3 -lg2c -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lblas-3 collect2: ld returned 1 exit status make: *** [gam.so] Error 1 ERROR: compilation failed for package 'gam' ** Removing '/usr/local/lib/R/site-library/gam' The downloaded packages are in /tmp/RtmpQmwp2v/downloaded_packages Warning message: installation of package 'gam' had non-zero exit status in: install.packages("gam")
Dirk Eddelbuettel
2006-Jul-28 16:58 UTC
[R] could someone help me to install packages "gam" (ubuntu 6.06)
$ apt-get install r-base-dev and you should get the required dependencies, in this case for Blas/Atlas. Hth, Dirk On Fri, Jul 28, 2006 at 07:04:13AM -0700, xingwang ye wrote:> > install.packages("gam") > Warning in install.packages("gam") : argument 'lib' is missing: using > /usr/local/lib/R/site-library > --- Please select a CRAN mirror for use in this session --- > Loading Tcl/Tk interface ... done > trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/gam_0.97.tar.gz' > Content type 'application/x-gzip' length 89613 bytes > opened URL > =================================================> downloaded 87Kb > > * Installing *source* package 'gam' ... > ** libs > g77 -fpic -g -O2 -c backfit.f -o backfit.o > g77 -fpic -g -O2 -c backlo.f -o backlo.o > g77 -fpic -g -O2 -c bsplvd.f -o bsplvd.o > g77 -fpic -g -O2 -c bvalue.f -o bvalue.o > g77 -fpic -g -O2 -c bvalus.f -o bvalus.o > g77 -fpic -g -O2 -c linear.f -o linear.o > gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 > -std=gnu99 -c loessc.c -o loessc.o > g77 -fpic -g -O2 -c loessf.f -o loessf.o > g77 -fpic -g -O2 -c lo.f -o lo.o > g77 -fpic -g -O2 -c qsbart.f -o qsbart.o > gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 > -std=gnu99 -c sbart.c -o sbart.o > g77 -fpic -g -O2 -c sgram.f -o sgram.o > g77 -fpic -g -O2 -c sinerp.f -o sinerp.o > g77 -fpic -g -O2 -c splsm.f -o splsm.o > g77 -fpic -g -O2 -c sslvrg.f -o sslvrg.o > g77 -fpic -g -O2 -c stxwx.f -o stxwx.o > gcc -shared -o gam.so backfit.o backlo.o bsplvd.o bvalue.o bvalus.o > linear.o loessc.o loessf.o lo.o qsbart.o sbart.o sgram.o sinerp.o > splsm.o sslvrg.o stxwx.o -lblas-3 -lg2c -lm -lgcc_s -L/usr/lib/R/lib > -lR > /usr/bin/ld: cannot find -lblas-3 > collect2: ld returned 1 exit status > make: *** [gam.so] Error 1 > ERROR: compilation failed for package 'gam' > ** Removing '/usr/local/lib/R/site-library/gam' > > The downloaded packages are in > /tmp/RtmpQmwp2v/downloaded_packages > Warning message: > installation of package 'gam' had non-zero exit status in: > install.packages("gam") > > ______________________________________________ > R-help at stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.-- Hell, there are no rules here - we're trying to accomplish something. -- Thomas A. Edison