Hi,
I cannot seem to get lme4 to work. I have installed the lme4 and Matrix
package with apt-get. and both can be found in /usr/lib/R/site-library.
When I tried an example for lmer, R could not find the function lmer(),
> library(lme4)
Attaching package: 'lme4'
The following object(s) are masked from package:nlme :
getCovariateFormula getResponseFormula groupedData
Error in autoloader(name = "confint", package = "MASS") :
autoloader did not find 'confint' in 'MASS'
> (fm1 <- lmer(decrease ~ treatment + (1|rowpos) + (1|colpos),
+ OrchardSprays))
Error: couldn't find function "lmer"
>
Is this a bug with the lme4 package for Debian (r-cran-lme4)?
Peter
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R : Copyright 2005, The R Foundation for Statistical Computing
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Loading Tcl/Tk interface ... done
Loading required package: tcltk
Loading required package: rgl
Loading required package: zoo
Loading required package: strucchange
Loading required package: sandwich
Loading required package: relimp
Loading required package: nnet
Loading required package: graphics
Loading required package: grDevices
Loading required package: stats
Loading required package: nlme
Attaching package: 'nlme'
The following object(s) are masked from package:stats :
contr.SAS
Loading required package: mvtnorm
Loading required package: multcomp
Loading required package: mgcv
This is mgcv 1.2-4
Loading required package: MASS
Loading required package: lmtest
Loading required package: lattice
Loading required package: grid
Loading required package: foreign
Loading required package: effects
Loading required package: car
Loading required package: abind
[Previously saved workspace restored]
> library(Matrix)
> library(lme4)
Attaching package: 'lme4'
The following object(s) are masked from package:nlme :
getCovariateFormula getResponseFormula groupedData
Error in autoloader(name = "confint", package = "MASS") :
autoloader did not find 'confint' in 'MASS'
> (fm1 <- lmer(decrease ~ treatment + (1|rowpos) + (1|colpos),
+ OrchardSprays))
Error: couldn't find function "lmer"
>
On 8/12/05, Peter Ho <peter at fe.up.pt> wrote:> Hi, > > I cannot seem to get lme4 to work. I have installed the lme4 and Matrix > package with apt-get. and both can be found in /usr/lib/R/site-library. > When I tried an example for lmer, R could not find the function lmer(),Try using install.packages("Matrix") install.packages("lme4") in R instead. I have not created and uploaded new Debian packages of the lme4 and Matrix R packages for several weeks. The versions on CRAN are more recent than the versions on the Debian archives.> > > library(lme4) > > Attaching package: 'lme4' > > > The following object(s) are masked from package:nlme : > > getCovariateFormula getResponseFormula groupedData > > Error in autoloader(name = "confint", package = "MASS") : > autoloader did not find 'confint' in 'MASS'Try not to have the nlme and the lme4 packages loaded simultaneously. It appears that you may have had Rcmdr loaded causing many of the other packages to be loaded. It would be better to use --vanilla in the call to R and keep the number of loaded packages to a minimum until you can work out the problem of where lmer can be found. It is a bit confusing. The lmer function was in the lme4 package but now is in the Matrix package.> > (fm1 <- lmer(decrease ~ treatment + (1|rowpos) + (1|colpos), > + OrchardSprays)) > Error: couldn't find function "lmer" > > > > Is this a bug with the lme4 package for Debian (r-cran-lme4)? > > > Peter > > > > ######################### > R : Copyright 2005, The R Foundation for Statistical Computing > Version 2.1.1 (2005-06-20), ISBN 3-900051-07-0 > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for a HTML browser interface to help. > Type 'q()' to quit R. > > Loading Tcl/Tk interface ... done > Loading required package: tcltk > Loading required package: rgl > Loading required package: zoo > Loading required package: strucchange > Loading required package: sandwich > Loading required package: relimp > Loading required package: nnet > Loading required package: graphics > Loading required package: grDevices > Loading required package: stats > Loading required package: nlme > > Attaching package: 'nlme' > > > The following object(s) are masked from package:stats : > > contr.SAS > > Loading required package: mvtnorm > Loading required package: multcomp > Loading required package: mgcv > This is mgcv 1.2-4 > Loading required package: MASS > Loading required package: lmtest > Loading required package: lattice > Loading required package: grid > Loading required package: foreign > Loading required package: effects > Loading required package: car > Loading required package: abind > [Previously saved workspace restored] > > > library(Matrix) > > library(lme4) > > Attaching package: 'lme4' > > > The following object(s) are masked from package:nlme : > > getCovariateFormula getResponseFormula groupedData > > Error in autoloader(name = "confint", package = "MASS") : > autoloader did not find 'confint' in 'MASS' > > (fm1 <- lmer(decrease ~ treatment + (1|rowpos) + (1|colpos), > + OrchardSprays)) > Error: couldn't find function "lmer" > > > > ______________________________________________ > R-help at stat.math.ethz.ch mailing list > stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide! R-project.org/posting-guide.html >