search for: lme4

...to. Together with estimable() from gmodels it works smooth. I also often run Rcmdr, mostly for quick graphics. After using Rcmdr, on reopening the R workspace all help libraries for Rcmdr (22 !) loads, among them nlme, but not Rcmdr itself. Why? Now I saw on the list yesterday, that lmer() from lme4 offers better coding possibilities for crossed random factors, it feels natural to switch from lme() to lmer() if estimable() still works on the objects. So I installed lme4, but got a conflict with the (auto)loaded nlme: > library(lme4) Loading required package: Matrix Loading required packa...

Thanks, posted to https://github.com/lme4/lme4/issues/412 for further discussion ... On Wed, Feb 22, 2017 at 10:03 AM, Therneau, Terry M., Ph.D. <therneau at mayo.edu> wrote: > I found this by accident yesterday. The program that crashes is the first > two lines of the example from the help page for nlmer. That example hasn...

I'm trying to use the lmeSplines package together with lme4. Below is (1) an example of lmeSplines together with nlme (2) an attempt to use lmeSplines with lme4 (3) then a comparison of the random effects from the two different methods. (1) require(lmeSplines) data(smSplineEx1) dat <- smSplineEx1 dat.lo <- loess(y~time, data=dat) plot(dat.lo) dat$a...

...S.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] lme4_1.1-12 Matrix_1.2-8 loaded via a namespace (and not attached): [1] minqa_1.2.4 MASS_7.3-46 compiler_3.4.0 tools_3.4.0 [5] Rcpp_0.12.9 splines_3.4.0 nlme_3.1-131 grid_3.4.0 [9] nloptr_1.0.4 lattice_0.20-34 > startvec <- c(Asym = 200, xmid = 725, scal = 350) > (nm...

Hi, I just installed version 2.11.1 on my Mac OS X 10.5.2. When I try running R from my xterm, I get the following error: Error in loadNamespace(name) : there is no package called 'lme4' Fatal error: unable to restore saved data in .RData I am returned to the terminal prompt and can not run R. I can open this version of R from the R console and tried installing the lme4 source package (per D. Bates' suggestion on 6-July) but get the following error: trying URL 'htt...

hello all, I am trying to use the function getCovariateFormula(nlme) in conjunction with the library lme4. When I load both packages I get the following message and the getCovariateFormula function no longer works: library(nlme) library(lme4) Attaching package 'lme4': The following object(s) are masked from package:nlme : contr.SAS getCovariateFormula getResponseFormula gr...

it takes a long time to load the lme4 package.anyone else encounter this problem? > system.time(library(lme4)) 佋佖伻侂佇佽佉仾伒伳伋佁伡伃伆侟仯伜Matrix 佋佖伻侂佇佽佉仾伒伳伋佁伡伃伆侟仯伜lattice [1] 19.90 0.30 25.56 NA NA > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32...

...ly, good help is hard to find.? Here's where I am: ? ... Loading required package: Matrix Loading required package: lattice Error in dyn.load(file, DLLpath = DLLpath, ...) : ? function 'cholmod_l_start' not provided by package 'Matrix' Error: package/namespace load failed for ?lme4? Error: package/namespace load failed for ?lme4? ? ? > sessionInfo() R version 2.15.1 (2012-06-22) Platform: x86_64-pc-linux-gnu (64-bit) locale: ?[1] LC_CTYPE=en_US.UTF-8????????? LC_NUMERIC=C???????????????? ?[3] LC_TIME=en_US.UTF-8?????????? LC_COLLATE=en_US.UTF-8?????? ?[5] LC_MONETARY=en...

Hi, I cannot seem to get lme4 to work. I have installed the lme4 and Matrix package with apt-get. and both can be found in /usr/lib/R/site-library. When I tried an example for lmer, R could not find the function lmer(), > library(lme4) Attaching package: 'lme4' The following object(s) are masked from pa...

I am currently using R 2.1.1 under Windows and I do not seem to be able to load the current versions of lme4/Matrix. I have run 'update.packages.' I understand this is still experimental software but I would like access to a working version. Thanks. Chuck R Output: > library(lme4) Loading required package: Matrix Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : ReadIt...

We have released to CRAN a new version of the (recommended) package Matrix, and of package lme4 yesterday. Anyone who gets the new version of Matrix *MUST* re-install lme4 -- if (s)he is using lme4 at all. Technical details about that further below. The fact that yesterday's version number of Matrix is 0.9995875-2, indicates that Matrix' version is indeed approaching 1.0 (*), and...

We have released to CRAN a new version of the (recommended) package Matrix, and of package lme4 yesterday. Anyone who gets the new version of Matrix *MUST* re-install lme4 -- if (s)he is using lme4 at all. Technical details about that further below. The fact that yesterday's version number of Matrix is 0.9995875-2, indicates that Matrix' version is indeed approaching 1.0 (*), and...

A larg program which worked with lme4/R about a year ago failed when I re-run it today. I reproduced the problem with the program below. -- When lme4 is not loaded, the program runs ok and fast enough -- When lme4 is loaded (but never used), the do.call fails with infinite recursion after 60 seconds. Memory used increases beyond...

A larg program which worked with lme4/R about a year ago failed when I re-run it today. I reproduced the problem with the program below. -- When lme4 is not loaded, the program runs ok and fast enough -- When lme4 is loaded (but never used), the do.call fails with infinite recursion after 60 seconds. Memory used increases beyond...

I have R version 2.10.1 (2009-12-14) installed on Ubuntu HH (version 8.04) I installed lme4 from the Ubuntu respository. When I executed the library(lme4) command, R responds that lme4.so was not found. I then uninstalled lme4 and tried again from cran. When the program tried to compile, there was a message that -llapack could not be found, so the package failed to install. If I exec...

I am unable to install package lme4, after several attempts to do so using various repository URLs. Just to make sure everything works fine with proxy, connection, etc, I installed ggplot2 and it worked fine. I am using command install.packages("lme4", lib="/myRlibs"), optionally using contrib argument with dif...

Hi all, I have a problem with package installing in Windows, on my PC machine. The end goal is to be able to use the lme() function. Here's what I did so far: > install.packages("lme4") Warning in install.packages("lme4") : argument 'lib' is missing: using 'C:\Users\Angela\Documents/R/win-library/2.9' --- Please select a CRAN mirror for use in this session --- trying URL 'http://cran.cnr.Berkeley.edu/bin/windows/contrib/2.9/lme4_0.999375-31.z...

Full_Name: Dale Barr Version: 2.5.1 (patched) OS: Ubuntu linux x86_64 Submission from: (NULL) (138.23.70.108) When RMySQL is loaded in before lme4, the summary() function for lmer objects in the lme4 packages produces the following error: Error in printMer(object) : no slot of name "status" for this object of class "table" When RMySQL is loaded AFTER lme4, however, no such error arises. For example, the following code g...

Dear all, I'm trying to install lme4 (after having installed R 2.4.0 from source, and having installed the latest Matrix package). lme4 fails with the following message: pedigree.o definition of _lme4_xSym in section (__DATA,__common) pedigree.o definition of _lme4_ySym in section (__DATA,__common) make: *** [lme4.so] Error 1 ERROR:...

This is a summary and extension of the thread "GLMM (lme4) vs. glmmPQL output" http://maths.newcastle.edu.au/~rking/R/help/04/01/0180.html In the new revision (#Version: 0.4-7) of lme4 the standard errors are close to those of the 4 other methods. Thanks to Douglas Bates, Saikat DebRoy for the revision, and to G?ran Brostr?m who run a simulation....