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Jose Claudio Faria

2005-Jul-07 11:57 UTC

[R] Tables: Invitation to make a collective package

Hi All,

I would like to make an invitation to make a collective package with all 
functions related to TABLES.

I know that there are many packages with these functions, the original idea is 
collect all this functions and to make a single package, because is arduous for 
the user know all this functions broadcast in many packages.

So, I think that the original packages can continue with its original functions,
but, is very good to know that exist one package with many (I dream all) the 
functions related to tables.

I've been working with these functions (while I am learning R programming):

#######################
#   Tables - Package  #
#######################

#
# 1. Tables
#

#
# Common function
#
tb.make.table.I <- function(x,
                             start,
                             end,
                             h,
                             right)
{
   f    <- table(cut(x, br=seq(start, end, h), right=right)) # Absolut freq
   fr   <- f/length(x)                                       # Relative freq
   frP  <- 100*(f/length(x))                                 # Relative freq,
%
   fac  <- cumsum(f)                                         # Cumulative
freq
   facP <- 100*(cumsum(f/length(x)))                         # Cumulative
freq, %
   fi   <- round(f, 2)
   fr   <- round(as.numeric(fr), 2)
   frP  <- round(as.numeric(frP), 2)
   fac  <- round(as.numeric(fac), 2)
   facP <- round(as.numeric(facP),2)
   res  <- data.frame(fi, fr, frP, fac, facP)                # Make final
table
   names(res) <- c('Class limits', 'fi', 'fr',
'fr(%)', 'fac', 'fac(%)')
   return(res)
}

#
# Common function
#
tb.make.table.II <- function (x,
                               k,
                               breaks=c('Sturges', 'Scott',
'FD'),
                               right=FALSE)
{
   x <- na.omit(x)

   # User defines only x and/or 'breaks'
   # (x, {k,}[breaks, right])
   if (missing(k)) {
     brk   <- match.arg(breaks)
     switch(brk,
            Sturges = k <- nclass.Sturges(x),
            Scott   = k <- nclass.scott(x),
            FD      = k <- nclass.FD(x))
     tmp   <- range(x)
     start <- tmp[1] - abs(tmp[2])/100
     end   <- tmp[2] + abs(tmp[2])/100
     R     <- end-start
     h     <- R/k
   }

   # User defines 'x' and 'k'
   # (x, k,[breaks, right])
   else {
     tmp   <- range(x)
     start <- tmp[1] - abs(tmp[2])/100
     end   <- tmp[2] + abs(tmp[2])/100
     R     <- end-start
     h     <- R/abs(k)
   }
   tbl     <- tb.make.table.I(x, start, end, h, right)
   return(tbl)
}

#
# With Gabor Grotendieck suggestions (thanks Gabor, very much!)
#
tb.table <- function(x, ...) UseMethod("tb.table")

#
# Table form vectors
#
tb.table.default <- function(x,
                              k,
                              start,
                              end,
                              h, breaks=c('Sturges', 'Scott',
'FD'),
                              right=FALSE)
{
   # User defines nothing or not 'x' isn't numeric -> stop
   stopifnot(is.numeric(x))
   x <- na.omit(x)

   # User defines only 'x'
   # (x, {k, start, end, h}, [breaks, right])
   if (missing(k) && missing(start) && missing(end) &&
missing(h) ) {
     brk   <- match.arg(breaks)
     switch(brk,
            Sturges = k <- nclass.Sturges(x),
            Scott   = k <- nclass.scott(x),
            FD      = k <- nclass.FD(x))
     tmp   <- range(x)
     start <- tmp[1] - abs(tmp[2])/100
     end   <- tmp[2] + abs(tmp[2])/100
     R     <- end-start
     h     <- R/k
   }

   # User defines 'x' and 'k'
   # (x, k, {start, end, h}, [breaks, right])
   else if (missing(start) && missing(end) && missing(h)) {
     stopifnot(length(k) >= 1)
     tmp   <- range(x)
     start <- tmp[1] - abs(tmp[2])/100
     end   <- tmp[2] + abs(tmp[2])/100
     R     <- end-start
     h     <- R/abs(k)
   }

   # User defines 'x', 'start' and 'end'
   # (x, {k,} start, end, {h,} [breaks, right])
   else if (missing(k) && missing(h)) {
     stopifnot(length(start) >= 1, length(end) >=1)
     tmp <- range(x)
     R   <- end-start
     k   <- sqrt(abs(R))
     if (k < 5)  k <- 5 # min value of k
     h   <- R/k
   }

   # User defines 'x', 'start', 'end' and 'h'
   # (x, {k,} start, end, h, [breaks, right])
   else if (missing(k)) {
     stopifnot(length(start) >= 1, length(end) >= 1, length(h) >= 1)
   }

   else stop('Error, please, see the function sintax!')
   tbl <- tb.make.table.I(x, start, end, h, right)
   return(tbl)
}


#
# Table form data.frame
#
tb.table.data.frame <- function(df,
                                 k,
                                 by,
                                 breaks=c('Sturges', 'Scott',
'FD'),
                                 right=FALSE)
{
   stopifnot(is.data.frame(df))
   tmpList <- list()
   nameF   <- character()
   nameY   <- character()

   # User didn't defines a factor
   if (missing(by)) {
     logCol  <- sapply(df, is.numeric)
     for (i in 1:ncol(df)) {
       if (logCol[i]) {
         x       <- as.matrix(df[ ,i])
         tbl     <- tb.make.table.II(x, k, breaks, right)
         tmpList <- c(tmpList, list(tbl))
       }
     }
     valCol <- logCol[logCol]
     names(tmpList) <- names(valCol)
     return(tmpList)
   }

   # User defines one factor
   else {
     namesdf <- names(df)
     pos     <- which(namesdf == by)
     stopifnot(is.factor((df[[pos]])))
     numF    <- table(df[[pos]])
     for(i in 1:length(numF)) {
       tmpdf  <- subset(df, df[[pos]] == names(numF[i]))
       logCol <- sapply(tmpdf, is.numeric)
       for (j in 1:ncol(tmpdf)) {
         if (logCol[j]) {
           x            <- as.matrix(tmpdf[ ,j])
           tbl          <- tb.make.table.II(x, k, breaks, right)
           newFY        <- list(tbl)
           nameF        <- names(numF[i])
           nameY        <- names(logCol[j])
           nameFY       <- paste(nameF,'.', nameY, sep="")
           names(newFY) <- sub(' +$', '', nameFY)
           tmpList      <- c(tmpList, newFY)
         }
       }
     }
   }
   return(tmpList)
}

############################
#     Tables package       #
#         to try           #
############################

# 1.Tables
# 1.1. Tables from vectors

# Making a vector
set.seed(1)
x=rnorm(100, 5, 1)
#x=as.factor(rep(1:10, 10))  # to try

tbl <- tb.table(x)
print(tbl); cat('\n')

# Equal to above
tbl <- tb.table(x, breaks='Sturges')
print(tbl); cat('\n')

tbl <- tb.table(x, breaks='Scott')
print(tbl); cat('\n')

tbl <- tb.table(x, breaks='FD')
print(tbl); cat('\n')

tbl <- tb.table(x, breaks='F', right=T)
print(tbl); cat('\n')

tbl <- tb.table(x, k=4)
print(tbl); cat('\n')

tbl <- tb.table(x, k=20)
print(tbl); cat('\n')

# Partial
tbl <- tb.table(x, start=4, end=6)
print(tbl); cat('\n')

# Partial
tbl <- tb.table(x, start=4.5, end=5.5)
print(tbl); cat('\n')

# Nonsense
tbl <- tb.table(x, start=0, end=10, h=.5)
print(tbl); cat('\n')

# First and last class forced (fi=0)
tbl <- tb.table(x, start=1, end=9, h=1)
print(tbl); cat('\n')

tbl <- tb.table(x, start=1, end=10, h=2)
print(tbl); cat('\n')


# 1.2. Tables from data.frame

# 1.2.1. Making a data.frame
mdf=data.frame(X1=rep(LETTERS[1:4], 25),
                X2=as.factor(rep(1:10, 10)),
                Y1=c(NA, NA, rnorm(96, 10, 1), NA, NA),
                Y2=rnorm(100, 58, 4),
                Y3=c(NA, NA, rnorm(98, -20, 2)))

tbl <- tb.table(mdf)
print(tbl)

# Equal to above
tbl <- tb.table(mdf, breaks='Sturges')
print(tbl)

tbl <- tb.table(mdf, breaks='Scott')
print(tbl)

tbl <- tb.table(mdf, breaks='FD')
print(tbl)

tbl <- tb.table(mdf, k=4)
print(tbl)

tbl <- tb.table(mdf, k=10)
print(tbl)

levels(mdf$X1)
tbl=tb.table(mdf, k=5, by='X1')
length(tbl)
names(tbl)
print(tbl)

tbl=tb.table(mdf, breaks='FD', by='X1')
print(tbl)

# A 'big' result: X2 is a factor with 10 levels!
tbl=tb.table(mdf, breaks='FD', by='X2')
print(tbl)

# 1.2.2. Using 'iris'
tbl=tb.table(iris, k=5)
print(tbl)

levels(iris$Species)
tbl=tb.table(iris, k=5, by='Species')
length(tbl)
names(tbl)
print(tbl)

tbl=tb.table(iris, k=5, by='Species', right=T)
print(tbl)

tbl=tb.table(iris, breaks='FD', by='Species')
print(tbl)

library(MASS)
levels(Cars93$Origin)
tbl=tb.table(Cars93, k=5, by='Origin')
names(tbl)
print(tbl)

tbl=tb.table(Cars93, breaks='FD', by='Origin')
print(tbl)

I find that this package would be very useful and would like to hear the opinion
of the interested parties in participating.

Best regards,
-- 
Jose Claudio Faria
Brasil/Bahia/UESC/DCET
Estatistica Experimental/Prof. Adjunto
mails:
  joseclaudio.faria at terra.com.br
  jc_faria at uesc.br
  jc_faria at uol.com.br
tel: 73-3634.2779

Gabor Grothendieck

2005-Jul-07 12:28 UTC

head link

[R] Tables: Invitation to make a collective package

If the functionality you are thinking of already exists across multiple
packages an alternative to creating a new package would be to create
a task view as in:
   http://cran.r-project.org/src/contrib/Views/
as explained in the ctv package and the article in R News 5/1.

On 7/7/05, Jose Claudio Faria <joseclaudio.faria at terra.com.br>
wrote:> Hi All,
> 
> I would like to make an invitation to make a collective package with all
> functions related to TABLES.
> 
> I know that there are many packages with these functions, the original idea
is
> collect all this functions and to make a single package, because is arduous
for
> the user know all this functions broadcast in many packages.
> 
> So, I think that the original packages can continue with its original
functions,
> but, is very good to know that exist one package with many (I dream all)
the
> functions related to tables.
> 
> I've been working with these functions (while I am learning R
programming):
> 
> #######################
> #   Tables - Package  #
> #######################
> 
> #
> # 1. Tables
> #
> 
> #
> # Common function
> #
> tb.make.table.I <- function(x,
>                             start,
>                             end,
>                             h,
>                             right)
> {
>   f    <- table(cut(x, br=seq(start, end, h), right=right)) # Absolut
freq
>   fr   <- f/length(x)                                       # Relative
freq
>   frP  <- 100*(f/length(x))                                 # Relative
freq, %
>   fac  <- cumsum(f)                                         # Cumulative
freq
>   facP <- 100*(cumsum(f/length(x)))                         # Cumulative
freq, %
>   fi   <- round(f, 2)
>   fr   <- round(as.numeric(fr), 2)
>   frP  <- round(as.numeric(frP), 2)
>   fac  <- round(as.numeric(fac), 2)
>   facP <- round(as.numeric(facP),2)
>   res  <- data.frame(fi, fr, frP, fac, facP)                # Make final
table
>   names(res) <- c('Class limits', 'fi', 'fr',
'fr(%)', 'fac', 'fac(%)')
>   return(res)
> }
> 
> #
> # Common function
> #
> tb.make.table.II <- function (x,
>                               k,
>                               breaks=c('Sturges', 'Scott',
'FD'),
>                               right=FALSE)
> {
>   x <- na.omit(x)
> 
>   # User defines only x and/or 'breaks'
>   # (x, {k,}[breaks, right])
>   if (missing(k)) {
>     brk   <- match.arg(breaks)
>     switch(brk,
>            Sturges = k <- nclass.Sturges(x),
>            Scott   = k <- nclass.scott(x),
>            FD      = k <- nclass.FD(x))
>     tmp   <- range(x)
>     start <- tmp[1] - abs(tmp[2])/100
>     end   <- tmp[2] + abs(tmp[2])/100
>     R     <- end-start
>     h     <- R/k
>   }
> 
>   # User defines 'x' and 'k'
>   # (x, k,[breaks, right])
>   else {
>     tmp   <- range(x)
>     start <- tmp[1] - abs(tmp[2])/100
>     end   <- tmp[2] + abs(tmp[2])/100
>     R     <- end-start
>     h     <- R/abs(k)
>   }
>   tbl     <- tb.make.table.I(x, start, end, h, right)
>   return(tbl)
> }
> 
> #
> # With Gabor Grotendieck suggestions (thanks Gabor, very much!)
> #
> tb.table <- function(x, ...) UseMethod("tb.table")
> 
> #
> # Table form vectors
> #
> tb.table.default <- function(x,
>                              k,
>                              start,
>                              end,
>                              h, breaks=c('Sturges',
'Scott', 'FD'),
>                              right=FALSE)
> {
>   # User defines nothing or not 'x' isn't numeric -> stop
>   stopifnot(is.numeric(x))
>   x <- na.omit(x)
> 
>   # User defines only 'x'
>   # (x, {k, start, end, h}, [breaks, right])
>   if (missing(k) && missing(start) && missing(end)
&& missing(h) ) {
>     brk   <- match.arg(breaks)
>     switch(brk,
>            Sturges = k <- nclass.Sturges(x),
>            Scott   = k <- nclass.scott(x),
>            FD      = k <- nclass.FD(x))
>     tmp   <- range(x)
>     start <- tmp[1] - abs(tmp[2])/100
>     end   <- tmp[2] + abs(tmp[2])/100
>     R     <- end-start
>     h     <- R/k
>   }
> 
>   # User defines 'x' and 'k'
>   # (x, k, {start, end, h}, [breaks, right])
>   else if (missing(start) && missing(end) && missing(h)) {
>     stopifnot(length(k) >= 1)
>     tmp   <- range(x)
>     start <- tmp[1] - abs(tmp[2])/100
>     end   <- tmp[2] + abs(tmp[2])/100
>     R     <- end-start
>     h     <- R/abs(k)
>   }
> 
>   # User defines 'x', 'start' and 'end'
>   # (x, {k,} start, end, {h,} [breaks, right])
>   else if (missing(k) && missing(h)) {
>     stopifnot(length(start) >= 1, length(end) >=1)
>     tmp <- range(x)
>     R   <- end-start
>     k   <- sqrt(abs(R))
>     if (k < 5)  k <- 5 # min value of k
>     h   <- R/k
>   }
> 
>   # User defines 'x', 'start', 'end' and
'h'
>   # (x, {k,} start, end, h, [breaks, right])
>   else if (missing(k)) {
>     stopifnot(length(start) >= 1, length(end) >= 1, length(h) >=
1)
>   }
> 
>   else stop('Error, please, see the function sintax!')
>   tbl <- tb.make.table.I(x, start, end, h, right)
>   return(tbl)
> }
> 
> 
> #
> # Table form data.frame
> #
> tb.table.data.frame <- function(df,
>                                 k,
>                                 by,
>                                 breaks=c('Sturges',
'Scott', 'FD'),
>                                 right=FALSE)
> {
>   stopifnot(is.data.frame(df))
>   tmpList <- list()
>   nameF   <- character()
>   nameY   <- character()
> 
>   # User didn't defines a factor
>   if (missing(by)) {
>     logCol  <- sapply(df, is.numeric)
>     for (i in 1:ncol(df)) {
>       if (logCol[i]) {
>         x       <- as.matrix(df[ ,i])
>         tbl     <- tb.make.table.II(x, k, breaks, right)
>         tmpList <- c(tmpList, list(tbl))
>       }
>     }
>     valCol <- logCol[logCol]
>     names(tmpList) <- names(valCol)
>     return(tmpList)
>   }
> 
>   # User defines one factor
>   else {
>     namesdf <- names(df)
>     pos     <- which(namesdf == by)
>     stopifnot(is.factor((df[[pos]])))
>     numF    <- table(df[[pos]])
>     for(i in 1:length(numF)) {
>       tmpdf  <- subset(df, df[[pos]] == names(numF[i]))
>       logCol <- sapply(tmpdf, is.numeric)
>       for (j in 1:ncol(tmpdf)) {
>         if (logCol[j]) {
>           x            <- as.matrix(tmpdf[ ,j])
>           tbl          <- tb.make.table.II(x, k, breaks, right)
>           newFY        <- list(tbl)
>           nameF        <- names(numF[i])
>           nameY        <- names(logCol[j])
>           nameFY       <- paste(nameF,'.', nameY,
sep="")
>           names(newFY) <- sub(' +$', '', nameFY)
>           tmpList      <- c(tmpList, newFY)
>         }
>       }
>     }
>   }
>   return(tmpList)
> }
> 
> ############################
> #     Tables package       #
> #         to try           #
> ############################
> 
> # 1.Tables
> # 1.1. Tables from vectors
> 
> # Making a vector
> set.seed(1)
> x=rnorm(100, 5, 1)
> #x=as.factor(rep(1:10, 10))  # to try
> 
> tbl <- tb.table(x)
> print(tbl); cat('\n')
> 
> # Equal to above
> tbl <- tb.table(x, breaks='Sturges')
> print(tbl); cat('\n')
> 
> tbl <- tb.table(x, breaks='Scott')
> print(tbl); cat('\n')
> 
> tbl <- tb.table(x, breaks='FD')
> print(tbl); cat('\n')
> 
> tbl <- tb.table(x, breaks='F', right=T)
> print(tbl); cat('\n')
> 
> tbl <- tb.table(x, k=4)
> print(tbl); cat('\n')
> 
> tbl <- tb.table(x, k=20)
> print(tbl); cat('\n')
> 
> # Partial
> tbl <- tb.table(x, start=4, end=6)
> print(tbl); cat('\n')
> 
> # Partial
> tbl <- tb.table(x, start=4.5, end=5.5)
> print(tbl); cat('\n')
> 
> # Nonsense
> tbl <- tb.table(x, start=0, end=10, h=.5)
> print(tbl); cat('\n')
> 
> # First and last class forced (fi=0)
> tbl <- tb.table(x, start=1, end=9, h=1)
> print(tbl); cat('\n')
> 
> tbl <- tb.table(x, start=1, end=10, h=2)
> print(tbl); cat('\n')
> 
> 
> # 1.2. Tables from data.frame
> 
> # 1.2.1. Making a data.frame
> mdf=data.frame(X1=rep(LETTERS[1:4], 25),
>                X2=as.factor(rep(1:10, 10)),
>                Y1=c(NA, NA, rnorm(96, 10, 1), NA, NA),
>                Y2=rnorm(100, 58, 4),
>                Y3=c(NA, NA, rnorm(98, -20, 2)))
> 
> tbl <- tb.table(mdf)
> print(tbl)
> 
> # Equal to above
> tbl <- tb.table(mdf, breaks='Sturges')
> print(tbl)
> 
> tbl <- tb.table(mdf, breaks='Scott')
> print(tbl)
> 
> tbl <- tb.table(mdf, breaks='FD')
> print(tbl)
> 
> tbl <- tb.table(mdf, k=4)
> print(tbl)
> 
> tbl <- tb.table(mdf, k=10)
> print(tbl)
> 
> levels(mdf$X1)
> tbl=tb.table(mdf, k=5, by='X1')
> length(tbl)
> names(tbl)
> print(tbl)
> 
> tbl=tb.table(mdf, breaks='FD', by='X1')
> print(tbl)
> 
> # A 'big' result: X2 is a factor with 10 levels!
> tbl=tb.table(mdf, breaks='FD', by='X2')
> print(tbl)
> 
> # 1.2.2. Using 'iris'
> tbl=tb.table(iris, k=5)
> print(tbl)
> 
> levels(iris$Species)
> tbl=tb.table(iris, k=5, by='Species')
> length(tbl)
> names(tbl)
> print(tbl)
> 
> tbl=tb.table(iris, k=5, by='Species', right=T)
> print(tbl)
> 
> tbl=tb.table(iris, breaks='FD', by='Species')
> print(tbl)
> 
> library(MASS)
> levels(Cars93$Origin)
> tbl=tb.table(Cars93, k=5, by='Origin')
> names(tbl)
> print(tbl)
> 
> tbl=tb.table(Cars93, breaks='FD', by='Origin')
> print(tbl)
> 
> I find that this package would be very useful and would like to hear the
opinion
> of the interested parties in participating.
> 
> Best regards,
> --
> Jose Claudio Faria
> Brasil/Bahia/UESC/DCET
> Estatistica Experimental/Prof. Adjunto
> mails:
>  joseclaudio.faria at terra.com.br
>  jc_faria at uesc.br
>  jc_faria at uol.com.br
> tel: 73-3634.2779
> 
> ______________________________________________
> R-help at stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide!
http://www.R-project.org/posting-guide.html
>

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