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Agustin Lobo

2001-Oct-18 17:30 UTC

[R] Rcmd SHLIB in rw1031 (R for Win)

Thanks for the answers on readme.packages.

I have installed Rw1031 from SetupR.exe including the option
for compiling source files and, following directions in 
www.stats.ox.ac.ul/pub/Rtools, have installed:

-tools.zip
-Perl (Active Perl)
-mingw-1.1.tar.gz
-copied sh.exe to c:\bin\sh.exe

After Perl installation, its directory is added to my path. I have also
added the directory where the R tools live, as well as the bin for
mingw.

My path looks like:


PATH=E:\PERL\BIN;E:\RW1031\RWINT;E:\RW1031\RWINT\BIN;C:\WINDOWS;C:\WINDOWS\COMMAND;C:\DOS;D:\;C:\UTILES\ULTRAEDT;C:\GZIP;C:\PROGRA~1\PATHFI~1.70;


Then I've tried to compile and build a dll for a C program (test.c)
that works fine in the R version for Linux.

I do:  



E:\rw1031\bin>Rcmd SHLIB e:/Rseg/test.c
make[1]: `libR.a' is up to date.
------- Building e:/Rseg/test.dll from e:/Rseg/test.a --------
echo LIBRARY e:/Rseg/test > e:/Rseg/test.def
echo EXPORTS >> e:/Rseg/test.def
nm e:/Rseg/test.a > Defs
sed -n '/^........ [BCDRT] _/s/^........ [BCDRT] _/ /p' Defs >>
e:/Rseg/test.def

rm -f Defs
gcc  --shared -s  -o e:/Rseg/test.dll e:/Rseg/test.def e:/Rseg/test.a
-LE:/RW10
31/src/gnuwin32  -lg2c -lR

E:\rw1031\bin>Rcmd SHLIB e:/Rseg/test.c
dlltool -k --as as   --dllname R.dll --def R.exp --output-lib libR.a
gcc   -IE:/RW1031/src/include -include E:/RW1031/src/include/globalvar.h
-Wall
-O2   -c e:/Rseg/test.c -o e:/Rseg/test.o
e:/Rseg/test.c:78: warning: `/*' within comment
e:/Rseg/test.c: In function `printListElement':
e:/Rseg/test.c:15: warning: unused variable `prova2'
e:/Rseg/test.c:15: warning: unused variable `prova'
e:/Rseg/test.c:14: warning: unused variable `s3'
e:/Rseg/test.c:14: warning: unused variable `s2'
e:/Rseg/test.c:14: warning: unused variable `s1'
e:/Rseg/test.c:14: warning: unused variable `g3'
e:/Rseg/test.c:14: warning: unused variable `g2'
e:/Rseg/test.c:14: warning: unused variable `g1'
e:/Rseg/test.c:9: warning: unused variable `names'
rm -f -f e:/Rseg/test.a
ar cr e:/Rseg/test.a *.o
e:\RW1031\RWINT\BIN\ar.exe: *.o: No such file or directory
make: *** [e:/Rseg/test.a] Error 1



I've checked, and ar.exe is in e:\RW1031\RWINT\BIN
...and test.a in e:/Rseg/


If I repeat, the process starts from test.a:

E:\rw1031\bin>Rcmd SHLIB e:/Rseg/test.c
make[1]: `libR.a' is up to date.
------- Building e:/Rseg/test.dll from e:/Rseg/test.a --------
echo LIBRARY e:/Rseg/test > e:/Rseg/test.def
echo EXPORTS >> e:/Rseg/test.def
nm e:/Rseg/test.a > Defs
sed -n '/^........ [BCDRT] _/s/^........ [BCDRT] _/ /p' Defs >>
e:/Rseg/test.def

rm -f Defs
gcc  --shared -s  -o e:/Rseg/test.dll e:/Rseg/test.def e:/Rseg/test.a
-LE:/RW10
31/src/gnuwin32  -lg2c -lR


Apparentely, all good. But, from R:
> dyn.load("test.dll")
> a <- segmentaF2001.new3(test5.stat,test5.ady)ITERACION: 1Error in .Call("printListElement", lista, t(stat),
ncol(stat),
nrow(stat)) : 
        .Call function name not in load table
Timing stopped at: NA NA 0.11 NA NA > 

The same code works fine under Linux. 

Does anyone see where is the problem?

Thanks

Agus

Dr. Agustin Lobo
Instituto de Ciencias de la Tierra (CSIC)
Lluis Sole Sabaris s/n
08028 Barcelona SPAIN
tel 34 93409 5410
fax 34 93411 0012
alobo at ija.csic.es



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Peter Dalgaard BSA

2001-Oct-18 17:41 UTC

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[R] Rcmd SHLIB in rw1031 (R for Win)

Agustin Lobo <alobo at ija.csic.es> writes:
> E:\rw1031\bin>Rcmd SHLIB e:/Rseg/test.c
> dlltool -k --as as   --dllname R.dll --def R.exp --output-lib libR.a
> gcc   -IE:/RW1031/src/include -include E:/RW1031/src/include/globalvar.h
> -Wall
> -O2   -c e:/Rseg/test.c -o e:/Rseg/test.o
> e:/Rseg/test.c:78: warning: `/*' within comment
> e:/Rseg/test.c: In function `printListElement':
> e:/Rseg/test.c:15: warning: unused variable `prova2'
> e:/Rseg/test.c:15: warning: unused variable `prova'
> e:/Rseg/test.c:14: warning: unused variable `s3'
> e:/Rseg/test.c:14: warning: unused variable `s2'
> e:/Rseg/test.c:14: warning: unused variable `s1'
> e:/Rseg/test.c:14: warning: unused variable `g3'
> e:/Rseg/test.c:14: warning: unused variable `g2'
> e:/Rseg/test.c:14: warning: unused variable `g1'
> e:/Rseg/test.c:9: warning: unused variable `names'
> rm -f -f e:/Rseg/test.a
> ar cr e:/Rseg/test.a *.o
> e:\RW1031\RWINT\BIN\ar.exe: *.o: No such file or directory
> make: *** [e:/Rseg/test.a] Error 1
> 
> 
> 
> I've checked, and ar.exe is in e:\RW1031\RWINT\BIN
> ...and test.a in e:/Rseg/
My guess is that either does you shell not expand *.o or test.o never
actually got made. Notice that it is *.o it cannot find. Is there
actually anything inside test.a?

-- 
   O__  ---- Peter Dalgaard             Blegdamsvej 3  
  c/ /'_ --- Dept. of Biostatistics     2200 Cph. N   
 (*) \(*) -- University of Copenhagen   Denmark      Ph: (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)             FAX: (+45) 35327907
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To: r-help-request at
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Agustin Lobo

2001-Oct-19 08:33 UTC

head link

[R] Rcmd SHLIB in rw1031 (R for Win)

On Thu, 18 Oct 2001, Richards, Tom wrote:
> Dear Agus:
> 
> Will you please respond always to the list on this, as I am having many
> problems with gcc/mingw32 right now, too.  Do you have mingw-1.1?
> 
> Thanks.
> Tom
Yes, MinGW-1.1.tar.gz, following the link included
in www.stats.ox.ac.uk/pub/Rtools and unpacking
with tar zxvf MinGW-1.1.tar.gz

Agus

> -----Original Message-----
> From: Peter Dalgaard BSA [mailto:p.dalgaard at biostat.ku.dk]
> Sent: Thursday, October 18, 2001 1:41 PM
> To: Agustin Lobo
> Cc: r-help
> Subject: Re: [R] Rcmd SHLIB in rw1031 (R for Win)
> 
> 
> Agustin Lobo <alobo at ija.csic.es> writes:
> 
> > E:\rw1031\bin>Rcmd SHLIB e:/Rseg/test.c
> > dlltool -k --as as   --dllname R.dll --def R.exp --output-lib libR.a
> > gcc   -IE:/RW1031/src/include -include
E:/RW1031/src/include/globalvar.h
> > -Wall
> > -O2   -c e:/Rseg/test.c -o e:/Rseg/test.o
> > e:/Rseg/test.c:78: warning: `/*' within comment
> > e:/Rseg/test.c: In function `printListElement':
> > e:/Rseg/test.c:15: warning: unused variable `prova2'
> > e:/Rseg/test.c:15: warning: unused variable `prova'
> > e:/Rseg/test.c:14: warning: unused variable `s3'
> > e:/Rseg/test.c:14: warning: unused variable `s2'
> > e:/Rseg/test.c:14: warning: unused variable `s1'
> > e:/Rseg/test.c:14: warning: unused variable `g3'
> > e:/Rseg/test.c:14: warning: unused variable `g2'
> > e:/Rseg/test.c:14: warning: unused variable `g1'
> > e:/Rseg/test.c:9: warning: unused variable `names'
> > rm -f -f e:/Rseg/test.a
> > ar cr e:/Rseg/test.a *.o
> > e:\RW1031\RWINT\BIN\ar.exe: *.o: No such file or directory
> > make: *** [e:/Rseg/test.a] Error 1
> > 
> > 
> > 
> > I've checked, and ar.exe is in e:\RW1031\RWINT\BIN
> > ...and test.a in e:/Rseg/
> 
> My guess is that either does you shell not expand *.o or test.o never
> actually got made. Notice that it is *.o it cannot find. Is there
> actually anything inside test.a?
> 
> -- 
>    O__  ---- Peter Dalgaard             Blegdamsvej 3  
>   c/ /'_ --- Dept. of Biostatistics     2200 Cph. N   
>  (*) \(*) -- University of Copenhagen   Denmark      Ph: (+45) 35327918
> ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)             FAX: (+45) 35327907
>
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.
> -.-
> r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
> Send "info", "help", or "[un]subscribe"
> (in the "body", not the subject !)  To: r-help-request at
stat.math.ethz.ch
>
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> _._
> 
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To: r-help-request at
stat.math.ethz.ch
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Agustin Lobo

2001-Oct-19 08:56 UTC

head link

SOLVED: [R] Rcmd SHLIB in rw1031 (R for Win)

I had one missing directory in my path.
mingw-1-1-tar.gz contains 2 "bin" directories.
I used tar zxvf MinGW-1.1.tar.gz from directory rw1031/Rwint
and got a rw1031/Rwint/bin directory (which I did include in
my path), but also another rw1031/Rwint/mingw32/bin (which
I had not seen). 

I also have included E:\rw1031 and E:\rw1031\bin in my path,
but it seems to me that the missing rw1031/Rwint/mingw32/bin 
was the cause of the problem.

Thanks!

Dr. Agustin Lobo
Instituto de Ciencias de la Tierra (CSIC)
Lluis Sole Sabaris s/n
08028 Barcelona SPAIN
tel 34 93409 5410
fax 34 93411 0012
alobo at ija.csic.es


On Thu, 18 Oct 2001, Agustin Lobo wrote:
> 
> Thanks for the answers on readme.packages.
> 
> I have installed Rw1031 from SetupR.exe including the option
> for compiling source files and, following directions in 
> www.stats.ox.ac.ul/pub/Rtools, have installed:
> 
> -tools.zip
> -Perl (Active Perl)
> -mingw-1.1.tar.gz
> -copied sh.exe to c:\bin\sh.exe
> 
> After Perl installation, its directory is added to my path. I have also
> added the directory where the R tools live, as well as the bin for
> mingw.
> 
> My path looks like:
> 
> 
>
PATH=E:\PERL\BIN;E:\RW1031\RWINT;E:\RW1031\RWINT\BIN;C:\WINDOWS;C:\WINDOWS\COMMAND;C:\DOS;D:\;C:\UTILES\ULTRAEDT;C:\GZIP;C:\PROGRA~1\PATHFI~1.70;
> 
> 
> Then I've tried to compile and build a dll for a C program (test.c)
> that works fine in the R version for Linux.
> 
> I do:  
> 
> 
> 
> E:\rw1031\bin>Rcmd SHLIB e:/Rseg/test.c
> make[1]: `libR.a' is up to date.
> ------- Building e:/Rseg/test.dll from e:/Rseg/test.a --------
> echo LIBRARY e:/Rseg/test > e:/Rseg/test.def
> echo EXPORTS >> e:/Rseg/test.def
> nm e:/Rseg/test.a > Defs
> sed -n '/^........ [BCDRT] _/s/^........ [BCDRT] _/ /p' Defs
>>
> e:/Rseg/test.def
> 
> rm -f Defs
> gcc  --shared -s  -o e:/Rseg/test.dll e:/Rseg/test.def e:/Rseg/test.a
> -LE:/RW10
> 31/src/gnuwin32  -lg2c -lR
> 
> E:\rw1031\bin>Rcmd SHLIB e:/Rseg/test.c
> dlltool -k --as as   --dllname R.dll --def R.exp --output-lib libR.a
> gcc   -IE:/RW1031/src/include -include E:/RW1031/src/include/globalvar.h
> -Wall
> -O2   -c e:/Rseg/test.c -o e:/Rseg/test.o
> e:/Rseg/test.c:78: warning: `/*' within comment
> e:/Rseg/test.c: In function `printListElement':
> e:/Rseg/test.c:15: warning: unused variable `prova2'
> e:/Rseg/test.c:15: warning: unused variable `prova'
> e:/Rseg/test.c:14: warning: unused variable `s3'
> e:/Rseg/test.c:14: warning: unused variable `s2'
> e:/Rseg/test.c:14: warning: unused variable `s1'
> e:/Rseg/test.c:14: warning: unused variable `g3'
> e:/Rseg/test.c:14: warning: unused variable `g2'
> e:/Rseg/test.c:14: warning: unused variable `g1'
> e:/Rseg/test.c:9: warning: unused variable `names'
> rm -f -f e:/Rseg/test.a
> ar cr e:/Rseg/test.a *.o
> e:\RW1031\RWINT\BIN\ar.exe: *.o: No such file or directory
> make: *** [e:/Rseg/test.a] Error 1
> 
> 
> 
> I've checked, and ar.exe is in e:\RW1031\RWINT\BIN
> ...and test.a in e:/Rseg/
> 
> 
> If I repeat, the process starts from test.a:
> 
> E:\rw1031\bin>Rcmd SHLIB e:/Rseg/test.c
> make[1]: `libR.a' is up to date.
> ------- Building e:/Rseg/test.dll from e:/Rseg/test.a --------
> echo LIBRARY e:/Rseg/test > e:/Rseg/test.def
> echo EXPORTS >> e:/Rseg/test.def
> nm e:/Rseg/test.a > Defs
> sed -n '/^........ [BCDRT] _/s/^........ [BCDRT] _/ /p' Defs
>>
> e:/Rseg/test.def
> 
> rm -f Defs
> gcc  --shared -s  -o e:/Rseg/test.dll e:/Rseg/test.def e:/Rseg/test.a
> -LE:/RW10
> 31/src/gnuwin32  -lg2c -lR
> 
> 
> Apparentely, all good. But, from R:
> 
> > dyn.load("test.dll")
> > a <- segmentaF2001.new3(test5.stat,test5.ady)
> ITERACION: 1Error in .Call("printListElement", lista, t(stat),
ncol(stat),
> nrow(stat)) : 
>         .Call function name not in load table
> Timing stopped at: NA NA 0.11 NA NA 
> > 
> 
> 
> The same code works fine under Linux. 
> 
> Does anyone see where is the problem?
> 
> Thanks
> 
> Agus
> 
> Dr. Agustin Lobo
> Instituto de Ciencias de la Tierra (CSIC)
> Lluis Sole Sabaris s/n
> 08028 Barcelona SPAIN
> tel 34 93409 5410
> fax 34 93411 0012
> alobo at ija.csic.es
> 
> 
> 
>
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> r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
> Send "info", "help", or "[un]subscribe"
> (in the "body", not the subject !)  To: r-help-request at
stat.math.ethz.ch
>
_._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._
> 
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To: r-help-request at
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_._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._

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