Hello!
My Name is Jan Matthias and I am from Cologne University in Germany. I have
problems with R , version 1.9.1.
I also use the package tcltk and follow the instructions from a command file
which i will send with.
My problem is that the program always stops at the same step, showing different
Error Messages sometimes. My Hope is that you have a suggestion what the problem
is and how to solve it. Because this is the first time I use this program and I
have no idea anymore.
First an example log (I also got other Error messages as I wrote, but in the
same step! For example that the file could not be found):
R : Copyright 2004, The R Foundation for Statistical Computing
Version 1.9.1 (2004-06-21), ISBN 3-900051-00-3
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.
[Previously saved workspace restored]
> local({pkg <- select.list(sort(.packages(all.available =3D TRUE)))
+ if(nchar(pkg)) library(pkg, character.only=3DTRUE)})> library(GOAT)
> initGOAT()
[1] "Showing the Tk GUI..."
[1] "Analyzing enrichment..."
Done.>
> write.table(1h.txt.proc, file=3D"1h.proc.xls",
sep=3D"\t",quote=3DF, col.names=3DF, row.names=3DF)
Error: syntax error
I checked the file names, but still I got that message.
Additionally here the instructions I followed step by step:
turn on R 1.9.1.
load package tcltk
type in: library(GOAT)
initGOAT()
#a new window will open
select your inputfile and your organism
analyze
write.table(atest.txt.proc, file=3D"goatest.proc.xls",
sep=3D"\t",quote=3DF, col.names=3DF, row.names=3DF)=20
write.table(atest.txt.func, file=3D"goatest.func.xls",
sep=3D"\t",quote=3DF, col.names=3DF, row.names=3DF)
write.table(atest.txt.comp, file=3D"goatest.comp.xls",
sep=3D"\t",quote=3DF, col.names=3DF, row.names=3DF)
#atest.text.proc or func or comp says from which graph to get the data
I would be very thankful if you can give me any suggestion or help.
Kindly regards
Jan Matthias
Jan.Matthias at uni-koeln.de
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