Dirk Eddelbuettel
2004-Sep-24 02:59 UTC
[Rd] Cannot build cluster_1.9,6 under R 2.0.0 beta Sep 21
Doing the normal build process [1] for a first time with a R 2.0.0 snapshot
-- the Sep 21 version I uploaded to Debian's 'experimental' section
two days
ago, ended in failure. The package in question is cluster 1.9.6 which should
be 2.0.0-ready.
The (partial) log follows:
-----------------------------------------------------------------------------
[...]
g77 -mieee-fp -fPIC -g -O2 -c twins.f -o twins.o
gcc -shared -o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o
spannel.o twins.o -L/usr/lib/gcc-lib/i486-linux/3.3.4
-L/usr/lib/gcc-lib/i486-linux/3.3.4/../../.. -lfrtbegin -lg2c -lm -lgcc_s
-L/usr/lib/R/lib -lR
make[1]: Leaving directory `/tmp/buildd/cluster-1.9.6/src'
** R
** data
** moving datasets to lazyload DB
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'cluster'
Formats: text html latex example
agnes text html latex example
agnes.object text html latex
agriculture text html latex example
animals text html latex example
bannerplot text html latex
clara text html latex example
clara.object text html latex
clusplot text html latex
clusplot.default text html latex example
clusplot.partition text html latex example
cluster-internal text html latex
daisy text html latex example
diana text html latex example
diana.object text html latex example
dissimilarity.object text html latex
ellipsoidhull text html latex example
fanny text html latex example
fanny.object text html latex
flower text html latex example
lower.to.upper.tri.inds text html latex example
mona text html latex example
mona.object text html latex
pam text html latex example
pam.object text html latex example
partition.object text html latex
plot.agnes text html latex example
plot.diana text html latex example
plot.mona text html latex
plot.partition text html latex example
pltree text html latex
pltree.twins text html latex example
pluton text html latex example
predict.ellipsoid text html latex
print.agnes text html latex
print.clara text html latex
print.diana text html latex
print.dissimilarity text html latex example
print.fanny text html latex
print.mona text html latex
print.pam text html latex
ruspini text html latex example
silhouette text html latex example
sizeDiss text html latex example
summary.agnes text html latex example
summary.clara text html latex example
summary.diana text html latex
summary.fanny text html latex
summary.mona text html latex
summary.pam text html latex
twins.object text html latex
volume.ellipsoid text html latex example
votes.repub text html latex
xclara text html latex
Error in .find.package(package, lib.loc, verbose = verbose) :
none of the packages were found
Execution halted
ERROR: installing package indices failed
make: *** [R_any_arch] Error 1
pbuilder: Failed autobuilding of package
-> Aborting with an error
-> unmounting dev/pts filesystem
-> unmounting proc filesystem
-> cleaning the build env
-> removing directory /var/local/cache/pbuilder/build//8487 and its
subdirectories
-----------------------------------------------------------------------------
The 'make' and 'pbuilder' messages come from the build
environment.
Any idea what is wrong here, and what I'd need to change?
Dirk
[1] This happens in a chroot(8) ennvironment, from a well-defined and very
basic Debian base system. "Build Dependendies" are then installed
-- which
in this case includes the R 2.0.0 beta from two days ago, as well a large
number of other things given all the various header and libs R needs.
This process is very close, but not identical to, what the Debian
autobuilders use.
--
Those are my principles, and if you don't like them... well, I have others.
-- Groucho Marx
Dirk Eddelbuettel
2004-Sep-24 03:36 UTC
[Rd] Cannot build cluster_1.9,6 under R 2.0.0 beta Sep 21
On Thu, Sep 23, 2004 at 07:58:58PM -0500, Dirk Eddelbuettel wrote:> Doing the normal build process [1] for a first time with a R 2.0.0 snapshot > -- the Sep 21 version I uploaded to Debian's 'experimental' section two days > ago, ended in failure. The package in question is cluster 1.9.6 which should > be 2.0.0-ready. > > The (partial) log follows:(See other mail for rest) Three more points: i) R 1.9.1 beta 20040921 works fine as packaged and installed into the chroot'ed build environment, and ii) The package stats, graphics and utils upon which cluster Depends: all load nicely in an interactive session. iii) The same error occurrs when I call 'R CMD INSTALL cluster-1.9.6' by hand. I'm still lost as to why I get Error in .find.package(package, lib.loc, verbose = verbose) : none of the packages were found Execution halted when building cluster. Dirk -- Those are my principles, and if you don't like them... well, I have others. -- Groucho Marx