search for: mona

Hi I have a problem using the package cluster on my binary data. I want to try mona at first. But i get the an error. hc<-read.table("all.txt", header=TRUE, sep="\t", row.names=1) srt(hc) `data.frame': 51 obs. of 59 variables: $ G1p : int 2 1 1 1 1 1 1 1 1 1 ... $ G1q : int 1 1 1 1 1 1 1 1 1 1 ... $ G2p : int 1 1 1 1 1 1 1 1 1 1 ... $ G2q : in...

Hello all, I what to print the banner plot that is output from the mona method in the cluster package but the problem is I dont want to print all that red ink. Here is an example: data(animals) ma <- mona(animals) ma ## Plot similar to Figure 10 in Struyf et al (1996) plot(ma) I can change the bar color by using the argument col=c(0,0) - plot(ma,col=c(0,0)) - but...

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..."1" But the call to daisy gives me the following error message.: > dfl1 <- daisy(vectver, type = list(asymm = c(1:length(vectver[,1])))) Error in daisy(vectver, type = list(asymm = c(1:length(vectver[, 1])))) : at least one binary variable has more than 2 levels. and the call to mona that. levels(as.factor(vectver)) [1] "0" "1" > r<-mona(vectver) Error in mona(vectver) : All variables must be binary (factor with 2 levels). Eryk. Dipl. bio-chem. Eryk Witold Wolski @ MPI-MG Dep. Vertebrate Genomics Ihnestrasse 73 14195 Berlin 'v'...

...ry/2.13/R-devel/include -I/usr/local/include -fpic -g -O2 -c fanny.c -o fanny.o gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fpic -g -O -c meet.f -o meet.o gfortran -fpic -g -O -c mona.f -o mona.o gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include -I/usr/local/include -fpic -g -O2 -c pam.c -o pam.o gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include -I/usr/local/include -fpic -g -O2 -c sildist.c -o sildist.o...

Asterisk work does not pay all of my bills, so I have joined up with a company that has a very good payment plan. I have recently become a Mona Vie Independent Distributor. I am not going to go into a sales pitch. This is just an FYI to this opportunity. The company has grown into a Billion dollar company in just 2 years. This company's compensation plan is the best and quickest that I have seen. My brother-in-law has only been in th...

Hi all, Is there a way of plotting a 'decision tree' from the results of Mona in the cluster package. The default bannerplot is not quite what I'm after - I would like a plot of the binary decision tree. Thanks Zoë [[alternative HTML version deleted]]

You might find this useful. I have modified the R 'edit' function by adding attr(x,"date.modified") <- substring(Sys.time(),1,19) before the last line. I then changed to ls() to sort functions, paste function name and time stamp from the contents of the "date.modified" attribute before output. Not particularly tidy but functional.

I feel the need to apologize for my previous email to the list. I was thinking that I was sharing something that I am currently exited with, with my associates. I now realize that I was sooo... off-topic, it's ridiculous. Sorry for the improper post to the list. Feel free to keep any further comments, concerning my improper use of the list, off-list. Thank You, Steven B TeamVie at

...The package in question is cluster 1.9.6 which should be 2.0.0-ready. The (partial) log follows: ----------------------------------------------------------------------------- [...] g77 -mieee-fp -fPIC -g -O2 -c twins.f -o twins.o gcc -shared -o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o spannel.o twins.o -L/usr/lib/gcc-lib/i486-linux/3.3.4 -L/usr/lib/gcc-lib/i486-linux/3.3.4/../../.. -lfrtbegin -lg2c -lm -lgcc_s -L/usr/lib/R/lib -lR make[1]: Leaving directory `/tmp/buildd/cluster-1.9.6/src' ** R ** data ** moving datasets to lazyload DB ** preparing package for lazy...

Dear R-users, If I would like to track the date when an R-object (specifically an R- function) was modified, how can I achieve that? Furthermore, how can I sort these objects based on date modified? Your help is greatly appreciated All the best Mona -- ***************************************************** *Dr. Mona Kanaan * *Department of Epidemiology and Population Health * *Faculty of Health Sciences * *The American University of Beirut * *P.O. Box 11-0236, Riad...

...f -o dysta.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c fanny.c -o fanny.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g77 -fpic -g -O2 -c meet.f -o meet.o g77 -fpic -g -O2 -c mona.f -o mona.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c pam.c -o pam.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c sildist.c -o sildist.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/l...

...es/ include -I/usr/local/include -fno-common -g -O2 -c clara.c -o clara.o g77 -fno-common -g -O2 -c daisy.f -o daisy.o g77 -fno-common -g -O2 -c dysta.f -o dysta.o g77 -fno-common -g -O2 -c fanny.f -o fanny.o g77 -fno-common -g -O2 -c meet.f -o meet.o g77 -fno-common -g -O2 -c mona.f -o mona.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -fno-common -g -O2 -c pam.c -o pam.o gcc-3.3 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/ include -I/usr/local/include -fno-common -g -O2 -c spannel.c -o spannel...

I need some help understanding how on of the example data sets is formatted in the basic R installation. If I load the Mona Loa CO2 data, with the command: > data(co2) I can view the data with: > co2 And the data are in the form of 11 rows labeled as years (1994-2004) and 12 columns labeled (Jan - Dec). This structure appears to be a dataframe, however, if I type the command > plot(co2) I get a t...

Hello all I wonder what can i use to cluster vectors which composed of several factors. lets say around 30 different factors compose a vector, and if the factor is present then it encoded as 1, if not presented then it will be encoded as 0. I was thinking of using hierarchical clustering, as i know the distance between two vector were calculated through euclidean distance function, but i dont

...left R alone. R worked fine, until I trued to update.packages(). Even then, many packages updated just fine, but two of them, cluster and mgcv, failed with the following error message (using cluster as an example): gcc -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o spannel.o twins.o -lg2c -lm -lgcc_s /usr/bin/ld: cannot find -lg2c collect2: ld returned 1 exit status make: *** [cluster.so] Error 1 I tracked this down as far as I could and got to this page: http://gcc.gnu.org/fortran/usage.html in the section about "Compatability with g77."...

...uestions. I believe I would need to do a 2 sample unpaired t-test. It would be great if someone could give me some feedback if this test is the most suitable one for my purpose, and maybe could explain to me what?s the easiest way to do this in R? You would help me loads!! Many thanks in advance Mona -- View this message in context: http://n4.nabble.com/comparing-attitudes-of-2-groups-likert-scales-tp2015738p2015738.html Sent from the R help mailing list archive at Nabble.com.

...ake && make fullcheck (Make fullcheck can take a long time, especially in the boot and nlme packages). The current version in known to pass the checks for our Linux/x86 systems but has two known problems on Solaris/gcc: An optimizer bug in gcc 3.0.3 causing "cluster" to fail in mona.f and a convergence issue with the glns example in nlme. -- O__ ---- Peter Dalgaard Blegdamsvej 3 c/ /'_ --- Dept. of Biostatistics 2200 Cph. N (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard@biostat.ku.dk)...

...lib -lf2c -lm /usr/bin/ld: can't locate file for: -lf77blas make: *** [KernSmooth.so] Error 1 ERROR: compilation failed for package `KernSmooth' Installing *source* package `cluster' ... [snip] cc -bundle -bundle_loader /sw/lib/R/bin/R.bin -o cluster.so clara.o daisy.o fanny.o meet.o mona.o pam.o spannel.o twins.o -L/usr/local/lib -lf2c -lm /usr/bin/ld: can't locate file for: -lf2c make: *** [cluster.so] Error 1 ERROR: compilation failed for package `cluster' --------------------------------------- So, in the first case, library f77blas was not found. I do have /sw/lib/lib...

...=== End of Compilation 5 === ** bandy === End of Compilation 6 === 1501-510 Compilation successful for file twins.f. cc -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall -Wl,-bI:/d ata1/laurent/R-1.6.1/etc/R.exp -L/usr/local/lib -o cluster.so clara.o daisy.o fa nny.o meet.o mona.o pam.o spannel.o twins.o -L/usr/local/lib -lreadline -ldl -l termcap -lm -lxlf90 -lxlopt -lxlf -lxlomp_ser -lm ld: 0711-317 ERROR: Undefined symbol: .meet_ ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more information. make: 1254-004 The error code from the last command is 8....