Hello List,
I have been using Sweave for my homework this last quarter and have been
very impressed at how much time and effort it saves me. I, however, have
run up against a problem which I have not been able to solve using any of
the Sweave/LaTeX tricks I know. I work through my homework one problem at a
time, typesetting equations and writing R code, etc. and occasionally use
'Stangle()' from within R to extract the code if I need to pin down a
problem or experiment interactively. I would like to be able to include
this resultant code in a verbatim environment in my final TeX'ed up document
as an appendix so that the grader can look it over, etc. I could implement
this in any number of ways using linux tools, but would like to know if
there is a clean way to do so using LaTeX or Sweave so that the latest
version of the code is included in my homework each time I run 'R CMD Sweave
HW4.Rnw; pdflatex HW4.tex'.
e.g I envision something such as:
\begin{document}
<<fig3, echo=false, results=hide, fig=true, eps=F>>plot(runif(1000))
@
TA here is my code:
% some manner of Sweave/LaTeX macro to include the R code tangled out of
this '.Rnw' document
% in this case it would just be 'plot(runif(1000))', perhaps manually
enclosed in a verbatim environment
\end{document}
I am running R-2.6.2 on Ubuntu Hardy Heron.
Thanks for all your help with Sweave. I think it is a fantastic tool.
Kyle
[[alternative HTML version deleted]]
Berwin A Turlach
2008-Nov-30 09:24 UTC
[R] including Sweave tangled code in '.Rnw' document
G'day Kyle, On Sat, 29 Nov 2008 11:11:37 -0800 "Kyle Matoba" <kmmatoba at ucdavis.edu> wrote:> I have been using Sweave for my homework this last quarter [...] but > would like to know if there is a clean way to do so using LaTeX or > Sweave so that the latest version of the code is included in my > homework each time I run 'R CMD Sweave HW4.Rnw; pdflatex HW4.tex'. > > e.g I envision something such as:A file HW4.Rnw such as the following seem to do what you want: ++++++++++++++ start HW4.Rnw ++++++++++++++++++ \documentclass[a4paper,11pt]{article} \usepackage{listings} \begin{document} <<fig3, echo=FALSE, results=hide, fig=TRUE, eps=FALSE>>plot(runif(1000)) @ <<>>mean(runif(1000)) @ TA here is my code: % some manner of Sweave/LaTeX macro to include the R code tangled out % of this '.Rnw' document in this case it would just be % 'plot(runif(1000))', perhaps manually enclosed in a verbatim % environment <<echo=FALSE, results=hide,split=TRUE>>Stangle(file="HW4.Rnw", output="XYZ.R", annotate=FALSE) @ \lstinputlisting[emptylines=0]{XYZ.R} \end{document} ++++++++++++++ end HW4.Rnw ++++++++++++++++++++ If the last Stangle command should be included in the listing, remove the "split=TRUE" option. And the "file=" argument to Stangle would have to be correctly set for each .Rnw file; did not find a way to automate this.> I am running R-2.6.2 on Ubuntu Hardy Heron.R 2.6.2 is quite old by now, the current version is R 2.8.0. When you upgrade, be aware of: o The default for 'stylepath' in Sweave's (default) RweaveLatex driver is now FALSE rather than TRUE if SWEAVE_STYLEPATH_DEFAULT is unset : see ?RweaveLatex. To support this, tools::texi2dvi adds the R 'texmf' directory to the input search path. which could mean that the way you process .Rnw file might no longer work. HTH. Cheers, Berwin =========================== Full address ============================Berwin A Turlach Tel.: +65 6516 4416 (secr) Dept of Statistics and Applied Probability +65 6516 6650 (self) Faculty of Science FAX : +65 6872 3919 National University of Singapore 6 Science Drive 2, Blk S16, Level 7 e-mail: statba at nus.edu.sg Singapore 117546 http://www.stat.nus.edu.sg/~statba
You could achieve this from the LaTeX side of things using the attachfile package: http://www.ctan.org/tex-archive/macros/latex/contrib/attachfile/ I use this package to attach data files and R code to pdf's generated with Sweave + pdflatex, so that the entire analysis can be reproduced from a single document. -Ista> ---------- Forwarded message ---------- > From: "Kyle Matoba" <kmmatoba at ucdavis.edu> > To: r-help at r-project.org > Date: Sat, 29 Nov 2008 11:11:37 -0800 > Subject: [R] including Sweave tangled code in '.Rnw' document > Hello List, > > I have been using Sweave for my homework this last quarter and have been > very impressed at how much time and effort it saves me. I, however, have > run up against a problem which I have not been able to solve using any of > the Sweave/LaTeX tricks I know. I work through my homework one problem at a > time, typesetting equations and writing R code, etc. and occasionally use > 'Stangle()' from within R to extract the code if I need to pin down a > problem or experiment interactively. I would like to be able to include > this resultant code in a verbatim environment in my final TeX'ed up document > as an appendix so that the grader can look it over, etc. I could implement > this in any number of ways using linux tools, but would like to know if > there is a clean way to do so using LaTeX or Sweave so that the latest > version of the code is included in my homework each time I run 'R CMD Sweave > HW4.Rnw; pdflatex HW4.tex'. > > e.g I envision something such as: > > \begin{document} > <<fig3, echo=false, results=hide, fig=true, eps=F>>> plot(runif(1000)) > @ > > TA here is my code: > > % some manner of Sweave/LaTeX macro to include the R code tangled out of > this '.Rnw' document > % in this case it would just be 'plot(runif(1000))', perhaps manually > enclosed in a verbatim environment > > \end{document} > I am running R-2.6.2 on Ubuntu Hardy Heron. > > > Thanks for all your help with Sweave. I think it is a fantastic tool. > > Kyle >
Kyle, In addition to "listings" already mentioned by Berwin, you may find useful the "answers" package. This is what I use to create assignments/ exams/exercise sets with solutions all in one file. HTH Vincent --- Vincent Goulet, Associate Professor ?cole d'actuariat Universit? Laval, Qu?bec Vincent.Goulet at act.ulaval.ca http://vgoulet.act.ulaval.ca Le sam. 29 nov. ? 14:11, Kyle Matoba a ?crit :> Hello List, > > I have been using Sweave for my homework this last quarter and have > been > very impressed at how much time and effort it saves me. I, however, > have > run up against a problem which I have not been able to solve using > any of > the Sweave/LaTeX tricks I know. I work through my homework one > problem at a > time, typesetting equations and writing R code, etc. and > occasionally use > 'Stangle()' from within R to extract the code if I need to pin down a > problem or experiment interactively. I would like to be able to > include > this resultant code in a verbatim environment in my final TeX'ed up > document > as an appendix so that the grader can look it over, etc. I could > implement > this in any number of ways using linux tools, but would like to know > if > there is a clean way to do so using LaTeX or Sweave so that the latest > version of the code is included in my homework each time I run 'R > CMD Sweave > HW4.Rnw; pdflatex HW4.tex'. > > e.g I envision something such as: > > \begin{document} > <<fig3, echo=false, results=hide, fig=true, eps=F>>> plot(runif(1000)) > @ > > TA here is my code: > > % some manner of Sweave/LaTeX macro to include the R code tangled > out of > this '.Rnw' document > % in this case it would just be 'plot(runif(1000))', perhaps manually > enclosed in a verbatim environment > > \end{document} > I am running R-2.6.2 on Ubuntu Hardy Heron. > > > Thanks for all your help with Sweave. I think it is a fantastic tool. > > Kyle > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.