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Luke Neraas

2007-Sep-26 00:29 UTC

[R] Paste a matrix column in pairwise fashion with other columns?

#Hello,

#I have would like to paste a single column of a matrix
# in pair wise fashion with other columns based upon
# even and odd column numbers.
# I can do it in a very clunky fashion and I know there
# must be a better way. below is a sample matrix and my extremely
# clunky code that gets the job done for a small matrix, but i plan to
# do this on a much grander scale. any help would be very much appreciated.

P.genotype.sample<-matrix(10,10,10)
P.genotype.sample[,1]<-c(2,2,1,5,1,1,5,6,1,3)
P.genotype.sample[,2]<-c(6,3,3,6,8,1,6,7,2,3)
P.genotype.sample[,3]<-c(2,2,2,3,3,2,2,2,3,3)
P.genotype.sample[,4]<-c(2,8,8,3,8,2,8,3,4,3)
P.genotype.sample[,5]<-c(3,3,8,3,6,1,1,1,1,3)
P.genotype.sample[,6]<-c(6,3,8,8,6,8,7,3,1,7)
P.genotype.sample[,7]<-c(1,5,5,1,5,1,1,5,5,5)
P.genotype.sample[,8]<-c(5,5,5,5,7,6,7,5,5,8)
P.genotype.sample[,9]<-c(5,5,8,5,5,5,5,2,5,2)
P.genotype.sample[,10]<-c(5,8,8,8,8,5,8,5,8,2)
P.genotype.sample

# I would like to paste column 1 with every odd column
# I would like to paste column 2 with every even column

#I know i can do it step by step in this fashion

Column.1.2_by_Column.3.4<-paste(P.genotype.sample[,1:2],P.genotype.sample
[,3:4])
Column.1.2_by_Column.3.4

Column.1.2_by_Column.5.6<-paste(P.genotype.sample[,1:2],P.genotype.sample
[,5:6])
Column.1.2_by_Column.5.6

Column.1.2_by_Column.7.8<-paste(P.genotype.sample[,1:2],P.genotype.sample
[,7:8])
Column.1.2_by_Column.7.8

Column.1.2_by_Column.9.10<-paste(P.genotype.sample[,1:2],P.genotype.sample
[,9:10])
Column.1.2_by_Column.9.10

Column.1.2.data.matrix<- matrix(20,20,4)

Column.1.2.data.list<-list(Column.1.2_by_Column.3.4,Column.1.2_by_Column.5.6
,
               Column.1.2_by_Column.7.8,Column.1.2_by_Column.9.10)
for (i in 1:4){
Column.1.2.data.matrix[,i]<-Column.1.2.data.list[[i]]
        }
Column.1.2.data.matrix

# However i will have many more data columns to compare to in a larger data
set
# and I was wondering if there was a more clever way to do this and still
# come up with the same result.

# Any help would be greatly appreciated

# Thanks in advance

Luke Neraas

lukasneraas.r@gmail.com

University of Alaska Fairbanks
School of Fisheries and Ocean Sciences
11120 Glacier Highway
UAF Fisheries Division
Juneau, AK 99801

	[[alternative HTML version deleted]]

jim holtman

2007-Sep-26 01:05 UTC

head link

[R] Paste a matrix column in pairwise fashion with other columns?

try this:
> P.genotype.sample<-matrix(10,10,10)
> P.genotype.sample[,1]<-c(2,2,1,5,1,1,5,6,1,3)
> P.genotype.sample[,2]<-c(6,3,3,6,8,1,6,7,2,3)
> P.genotype.sample[,3]<-c(2,2,2,3,3,2,2,2,3,3)
> P.genotype.sample[,4]<-c(2,8,8,3,8,2,8,3,4,3)
> P.genotype.sample[,5]<-c(3,3,8,3,6,1,1,1,1,3)
> P.genotype.sample[,6]<-c(6,3,8,8,6,8,7,3,1,7)
> P.genotype.sample[,7]<-c(1,5,5,1,5,1,1,5,5,5)
> P.genotype.sample[,8]<-c(5,5,5,5,7,6,7,5,5,8)
> P.genotype.sample[,9]<-c(5,5,8,5,5,5,5,2,5,2)
> P.genotype.sample[,10]<-c(5,8,8,8,8,5,8,5,8,2)
> P.genotype.sample      [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
 [1,]    2    6    2    2    3    6    1    5    5     5
 [2,]    2    3    2    8    3    3    5    5    5     8
 [3,]    1    3    2    8    8    8    5    5    8     8
 [4,]    5    6    3    3    3    8    1    5    5     8
 [5,]    1    8    3    8    6    6    5    7    5     8
 [6,]    1    1    2    2    1    8    1    6    5     5
 [7,]    5    6    2    8    1    7    1    7    5     8
 [8,]    6    7    2    3    1    3    5    5    2     5
 [9,]    1    2    3    4    1    1    5    5    5     8
[10,]    3    3    3    3    3    7    5    8    2     2
> # create matrix of odd/even indices
> x <- matrix(3:ncol(P.genotype.sample), byrow=TRUE, ncol=2)
> # now create the desired output
> apply(x, 1, function(.row){+     paste(P.genotype.sample[,1:2], P.genotype.sample[,.row])
+ })


      [,1]  [,2]  [,3]  [,4]
 [1,] "2 2" "2 3" "2 1" "2 5"
 [2,] "2 2" "2 3" "2 5" "2 5"
 [3,] "1 2" "1 8" "1 5" "1 8"
 [4,] "5 3" "5 3" "5 1" "5 5"
 [5,] "1 3" "1 6" "1 5" "1 5"
 [6,] "1 2" "1 1" "1 1" "1 5"
 [7,] "5 2" "5 1" "5 1" "5 5"
 [8,] "6 2" "6 1" "6 5" "6 2"
 [9,] "1 3" "1 1" "1 5" "1 5"
[10,] "3 3" "3 3" "3 5" "3 2"
[11,] "6 2" "6 6" "6 5" "6 5"
[12,] "3 8" "3 3" "3 5" "3 8"
[13,] "3 8" "3 8" "3 5" "3 8"
[14,] "6 3" "6 8" "6 5" "6 8"
[15,] "8 8" "8 6" "8 7" "8 8"
[16,] "1 2" "1 8" "1 6" "1 5"
[17,] "6 8" "6 7" "6 7" "6 8"
[18,] "7 3" "7 3" "7 5" "7 5"
[19,] "2 4" "2 1" "2 5" "2 8"
[20,] "3 3" "3 7" "3 8" "3
2">

On 9/25/07, Luke Neraas <lukasneraas.r at gmail.com>
wrote:> #Hello,
>
> #I have would like to paste a single column of a matrix
> # in pair wise fashion with other columns based upon
> # even and odd column numbers.
> # I can do it in a very clunky fashion and I know there
> # must be a better way. below is a sample matrix and my extremely
> # clunky code that gets the job done for a small matrix, but i plan to
> # do this on a much grander scale. any help would be very much appreciated.
>
> P.genotype.sample<-matrix(10,10,10)
> P.genotype.sample[,1]<-c(2,2,1,5,1,1,5,6,1,3)
> P.genotype.sample[,2]<-c(6,3,3,6,8,1,6,7,2,3)
> P.genotype.sample[,3]<-c(2,2,2,3,3,2,2,2,3,3)
> P.genotype.sample[,4]<-c(2,8,8,3,8,2,8,3,4,3)
> P.genotype.sample[,5]<-c(3,3,8,3,6,1,1,1,1,3)
> P.genotype.sample[,6]<-c(6,3,8,8,6,8,7,3,1,7)
> P.genotype.sample[,7]<-c(1,5,5,1,5,1,1,5,5,5)
> P.genotype.sample[,8]<-c(5,5,5,5,7,6,7,5,5,8)
> P.genotype.sample[,9]<-c(5,5,8,5,5,5,5,2,5,2)
> P.genotype.sample[,10]<-c(5,8,8,8,8,5,8,5,8,2)
> P.genotype.sample
>
> # I would like to paste column 1 with every odd column
> # I would like to paste column 2 with every even column
>
> #I know i can do it step by step in this fashion
>
>
Column.1.2_by_Column.3.4<-paste(P.genotype.sample[,1:2],P.genotype.sample
> [,3:4])
> Column.1.2_by_Column.3.4
>
>
Column.1.2_by_Column.5.6<-paste(P.genotype.sample[,1:2],P.genotype.sample
> [,5:6])
> Column.1.2_by_Column.5.6
>
>
Column.1.2_by_Column.7.8<-paste(P.genotype.sample[,1:2],P.genotype.sample
> [,7:8])
> Column.1.2_by_Column.7.8
>
>
Column.1.2_by_Column.9.10<-paste(P.genotype.sample[,1:2],P.genotype.sample
> [,9:10])
> Column.1.2_by_Column.9.10
>
> Column.1.2.data.matrix<- matrix(20,20,4)
>
>
Column.1.2.data.list<-list(Column.1.2_by_Column.3.4,Column.1.2_by_Column.5.6
> ,
>               Column.1.2_by_Column.7.8,Column.1.2_by_Column.9.10)
> for (i in 1:4){
> Column.1.2.data.matrix[,i]<-Column.1.2.data.list[[i]]
>        }
> Column.1.2.data.matrix
>
> # However i will have many more data columns to compare to in a larger data
> set
> # and I was wondering if there was a more clever way to do this and still
> # come up with the same result.
>
> # Any help would be greatly appreciated
>
> # Thanks in advance
>
> Luke Neraas
>
> lukasneraas.r at gmail.com
>
> University of Alaska Fairbanks
> School of Fisheries and Ocean Sciences
> 11120 Glacier Highway
> UAF Fisheries Division
> Juneau, AK 99801
>
>        [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

-- 
Jim Holtman
Cincinnati, OH
+1 513 646 9390

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