John Sorkin
2010-Jul-06 16:29 UTC
[R] Rcmdr installation under Unbuntu installatiion errors
Unbuntu 10.04
R 2.10
I am trying to install Rcmdr and receive the following messages:
The downloaded packages are in
?/tmp/RtmpzhjDZG/downloaded_packages?
Warning messages:
1: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'Rmpi' had non-zero exit status
2: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'rpvm' had non-zero exit status
3: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'rsprng' had non-zero exit status
4: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'tkrplot' had non-zero exit status
5: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'rgl' had non-zero exit status
6: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'RODBC' had non-zero exit status
7: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'shapes' had non-zero exit status
8: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'latentnet' had non-zero exit status
9: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'VIM' had non-zero exit status
10: In install.packages("Rcmdr", dependencies = TRUE) :
installation of package 'statnet' had non-zero exit status
Do I need to be concerned? Do I need to take any action?
Thank you,
John
John Sorkin M.D., Ph.D.
Chief, Biostatistics and Informatics
Baltimore VA Medical Center GRECC,
University of Maryland School of Medicine Claude D. Pepper OAIC,
University of Maryland Clinical Nutrition Research Unit, and
Baltimore VA Center Stroke of Excellence
University of Maryland School of Medicine
Division of Gerontology
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
jsorkin at grecc.umaryland.edu
Confidentiality Statement:
This email message, including any attachments, is for th...{{dropped:6}}
Vojtěch Zeisek
2010-Jul-06 17:52 UTC
[R] Rcmdr installation under Unbuntu installatiion errors
Hello, 1) Try Rkward, it is much more better, 2) You can install Rcmdr directly via r-cran-rcmdr (generaly, search r-cran-*; You can also add special repository, see <http://cran.r- project.org/bin/linux/ubuntu/>) and/or 3) if You wish to install normal packages from source (that is IMHO what install.packages() does in Linux), You need development packages for R as well as kernel header, compiler for Fortran, C and so on. I do not know how are those packages named in Ubuntu, but it should be no problem to find it via Synaptics. But I'd prefer solution 2. :-) Best regards, Vojt?ch Zeisek Dne ?t 6. ?ervence 2010 18:29:47 John Sorkin napsal(a):> Unbuntu 10.04 > R 2.10 > > I am trying to install Rcmdr and receive the following messages: > > The downloaded packages are in > ?/tmp/RtmpzhjDZG/downloaded_packages? > Warning messages: > 1: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'Rmpi' had non-zero exit status > 2: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'rpvm' had non-zero exit status > 3: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'rsprng' had non-zero exit status > 4: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'tkrplot' had non-zero exit status > 5: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'rgl' had non-zero exit status > 6: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'RODBC' had non-zero exit status > 7: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'shapes' had non-zero exit status > 8: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'latentnet' had non-zero exit status > 9: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'VIM' had non-zero exit status > 10: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'statnet' had non-zero exit status > > Do I need to be concerned? Do I need to take any action? > > Thank you, > John > > > John Sorkin M.D., Ph.D. > Chief, Biostatistics and Informatics > Baltimore VA Medical Center GRECC, > University of Maryland School of Medicine Claude D. Pepper OAIC, > University of Maryland Clinical Nutrition Research Unit, and > Baltimore VA Center Stroke of Excellence > > University of Maryland School of Medicine > Division of Gerontology > Baltimore VA Medical Center > 10 North Greene Street > GRECC (BT/18/GR) > Baltimore, MD 21201-1524 > > (Phone) 410-605-7119 > (Fax) 410-605-7913 (Please call phone number above prior to faxing) > jsorkin at grecc.umaryland.edu > > Confidentiality Statement: > This email message, including any attachments, is for th...{{dropped:6}} > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html and provide commented, > minimal, self-contained, reproducible code.-- Vojt?ch Zeisek Department of Botany, Faculty of Science, Charles Uni., Prague, CZ Institute of Botany, Academy of Science, Czech Republic Community of the openSUSE GNU/Linux https://www.natur.cuni.cz/faculty-en?set_language=en http://www.ibot.cas.cz/?p=index&site=en http://www.opensuse.org/ http://web.natur.cuni.cz/~zeisek/ ------------- dal?? ??st --------------- A non-text attachment was scrubbed... Name: [??dn? popis nen? k dispozici] Type: application/pgp-signature Size: 198 bytes Desc: This is a digitally signed message part. URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20100706/9a6ece34/attachment.bin>
Dear John, I see that you already got an answer suggesting that you install the Ubuntu Rcmdr package, or install the tools required to build R packages from source. If the packages shown below are the only ones that failed to install, then you're probably OK. Most are dependencies of dependencies. An exception is the rgl package, which is needed for 3D scatterplots. I hope this helps, John -------------------------------- John Fox Senator William McMaster Professor of Social Statistics Department of Sociology McMaster University Hamilton, Ontario, Canada web: socserv.mcmaster.ca/jfox> -----Original Message----- > From: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org] On > Behalf Of John Sorkin > Sent: July-06-10 12:30 PM > To: r-help at r-project.org > Subject: [R] Rcmdr installation under Unbuntu installatiion errors > > Unbuntu 10.04 > R 2.10 > > I am trying to install Rcmdr and receive the following messages: > > The downloaded packages are in > ?/tmp/RtmpzhjDZG/downloaded_packages? > Warning messages: > 1: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'Rmpi' had non-zero exit status > 2: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'rpvm' had non-zero exit status > 3: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'rsprng' had non-zero exit status > 4: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'tkrplot' had non-zero exit status > 5: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'rgl' had non-zero exit status > 6: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'RODBC' had non-zero exit status > 7: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'shapes' had non-zero exit status > 8: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'latentnet' had non-zero exit status > 9: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'VIM' had non-zero exit status > 10: In install.packages("Rcmdr", dependencies = TRUE) : > installation of package 'statnet' had non-zero exit status > > Do I need to be concerned? Do I need to take any action? > > Thank you, > John > > > John Sorkin M.D., Ph.D. > Chief, Biostatistics and Informatics > Baltimore VA Medical Center GRECC, > University of Maryland School of Medicine Claude D. Pepper OAIC, > University of Maryland Clinical Nutrition Research Unit, and > Baltimore VA Center Stroke of Excellence > > University of Maryland School of Medicine > Division of Gerontology > Baltimore VA Medical Center > 10 North Greene Street > GRECC (BT/18/GR) > Baltimore, MD 21201-1524 > > (Phone) 410-605-7119 > (Fax) 410-605-7913 (Please call phone number above prior to faxing) > jsorkin at grecc.umaryland.edu > > Confidentiality Statement: > This email message, including any attachments, is for th...{{dropped:6}} > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.