Chris Gaiteri
2009-Nov-06 22:28 UTC
[R] error in 2.10: "R include directory is empty" prevents package installation
After installing R 2.10 under RHEL5, whenever I attempt to install packages I get the error message: "Warning: R include directory is empty -- perhaps need to install R-devel.rpm or similar" Bioconductor did manage to install, but I do get this message when using install.packages() for anything. Suggestions for a fix would be appreciated! installation info:> version_ platform x86_64-redhat-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 10.0 year 2009 month 10 day 26 svn rev 50208 language R version.string R version 2.10.0 (2009-10-26) sample error message * installing *source* package ?corpcor? ... ** libs Warning: R include directory is empty -- perhaps need to install R-devel.rpm or similar gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c lambda.c -o lambda.o lambda.c:24:15: error: R.h: No such file or directory lambda.c: In function ?C_corlambda?: lambda.c:111: warning: implicit declaration of function ?Calloc? lambda.c:111: error: ?size_t? undeclared (first use in this function) lambda.c:111: error: (Each undeclared identifier is reported only once lambda.c:111: error: for each function it appears in.) lambda.c:111: error: expected ?)? before ?nn? lambda.c:111: warning: cast to pointer from integer of different size lambda.c:153: warning: implicit declaration of function ?Free? lambda.c: In function ?C_varlambda?: lambda.c:181: error: ?size_t? undeclared (first use in this function) lambda.c:181: error: expected ?)? before ?nn? lambda.c:181: warning: cast to pointer from integer of different size make: *** [lambda.o] Error 1 ERROR: compilation failed for package ?corpcor? * removing ?/usr/lib64/R/library/corpcor? * restoring previous ?/usr/lib64/R/library/corpcor? The downloaded packages are in ?/tmp/RtmpyrF9FA/downloaded_packages? Updating HTML index of packages in '.Library' Warning message: In install.packages("corpcor") : installation of package 'corpcor' had non-zero exit status
slakov
2010-Sep-16 14:27 UTC
[R] error in 2.10: "R include directory is empty" prevents package installation
I hope to revive this topic. I have the same error message when I try to install any package. Many thanks upfront! -- View this message in context: http://r.789695.n4.nabble.com/error-in-2-10-R-include-directory-is-empty-prevents-package-installation-tp907110p2542306.html Sent from the R help mailing list archive at Nabble.com.
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