Hi all, I am trying to install the package "GEOquery" in unix. I have downloaded the standard version of R and this package is not contained in the default. I know that I can select repositories under windows but I don't know how to do it in unix. Does anyone have any idea on this? Thank you in advance, Eleni [[alternative HTML version deleted]]
Eleni, download the package (I assume you know where it is),
on Linux you will need the source package. Then from R type
install.packages("<the file you downloaded>", repos=NULL)
Gabor
On Tue, Jan 22, 2008 at 11:26:12AM +0200, Eleni Christodoulou
wrote:> Hi all,
>
> I am trying to install the package "GEOquery" in unix. I have
downloaded the
> standard version of R and this package is not contained in the default. I
> know that I can select repositories under windows but I don't know how
to do
> it in unix. Does anyone have any idea on this?
>
> Thank you in advance,
> Eleni
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
--
Csardi Gabor <csardi at rmki.kfki.hu> UNIL DGM
See setRepositories() On 22/01/2008, Eleni Christodoulou <elenichri at gmail.com> wrote:> Hi all, > > I am trying to install the package "GEOquery" in unix. I have downloaded the > standard version of R and this package is not contained in the default. I > know that I can select repositories under windows but I don't know how to do > it in unix. Does anyone have any idea on this? > > Thank you in advance, > Eleni > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Henrique Dallazuanna Curitiba-Paran?-Brasil 25? 25' 40" S 49? 16' 22" O
On Tue, 22 Jan 2008, Eleni Christodoulou wrote:> Hi all, > > I am trying to install the package "GEOquery" in unix. I have downloaded the > standard version of R and this package is not contained in the default. I > know that I can select repositories under windows but I don't know how to do > it in unix. Does anyone have any idea on this??setRepositories (for both Windows and Unix).> > Thank you in advance, > Eleni > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
hits=-2.6 tests=BAYES_00 X-USF-Spam-Flag: NO On Tue, 2008-01-22 at 11:26 +0200, Eleni Christodoulou wrote:> Hi all, > > I am trying to install the package "GEOquery" in unix. I have downloaded the > standard version of R and this package is not contained in the default. I > know that I can select repositories under windows but I don't know how to do > it in unix. Does anyone have any idea on this? > > Thank you in advance, > EleniGEOquery is part of the Bioconductor project. See the web site for this project for instructions on how to install bioconductor and associated packages: http://www.bioconductor.org/ Installation instructions for GEOquery appear to be here: http://bioconductor.org/packages/2.1/bioc/html/GEOquery.html HTH G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/ UK. WC1E 6BT. [w] http://www.freshwaters.org.uk %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%