Dear All, I am trying to finding overlapping regions in two diff datasets for that I am using IRanges. But I am getting an error in the process of doing the overlap. Advance thanks df3.rl<-RangedData(IRanges(start=df3$V3,width=1), + space=df3$start) Error in .normargSEW0(start, "start") : 'start' must be a numeric vector (or NULL) Kumar [[alternative HTML version deleted]]
On 12/22/2011 05:50 AM, Naveen Thota wrote:> Dear All, > I am trying to finding overlapping regions in two diff datasets for that I > am using IRanges. But I am getting an error in the process of doing the > overlap. Advance thanks > > df3.rl<-RangedData(IRanges(start=df3$V3,width=1), > + space=df3$start) > Error in .normargSEW0(start, "start") : > 'start' must be a numeric vector (or NULL)Please ask questions about Bioconductor packages on the Bioconductor mailing list bioconductor.org/help/mailing-list The problem would appear to be that class(df3$V3) is not "numeric" Martin> > Kumar > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list > stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.-- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793
Maybe Matching Threads
- range and intersection
- R function found in two packages !
- Unexpected side effect of the ":::" operator on the value of isGeneric
- `[.data.frame`(df3, , -2) and NA columns
- Best way/practice to create a new data frame from two given ones with last column computed from the two data frames?