similar to: Build R-2.10.0 on HP-UX ia64 server

Hi R usrs, I want to build R-2.10.0 on HP-UX, but I got following error message: ld: Unsatisfied symbol "zgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "zherk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "ztrsm" in file

Greetings, We are trying to compile a 64bit version of R (1.7.0) on HP-UX (11.11), but are running into some problems. The following relevant filesets are installed: B3901BA B.11.11.04 HP C/ANSI C Developer's Bundle for HP-UX 11.i (S800) B3909DB B.11.11.60 HP Fortran 90 Compiler and associated products (S800) B3913DB C.03.33.01 HP aC++ Compiler (S800) This is our configure step:

Hi there, We are trying to compile a 64bit version of R (2.5.1) on HP-UX (B.11.23 U ia64), but are running into some problems. This is our configure step: ../configure --prefix=/rnd/homes/lfan/R251 --enable-R-shlib CC="cc" CFLAGS="+z +DD64" CXX="aCC" CXXFLAGS="-b -lxnet +z +DD64" FC="f90" FCFLAGS="+DD64" F77="f90"

Hi R users, I want to build R-2.8.1 on AIX5.3, but I got following error message: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/rnd/homes/jixu/tmp/R-2.8.1/library/stats/libs/stats.so': rtld: 0712-001 Symbol d1mach was referenced from module /rnd/homes/jixu/tmp/R-2.8.1/library/stats/libs/stats.so(), but a runtime definition of

I'm trying to compile R, not getting pass the configure step. R version is 2.7.1 from source tarball. Machine is HPUX 11.31, 32-CPUs of Itanium II. Compilers are HPUX C, C++ and Fortran. (B3910B A.06.15, May 2007) My config string: ./configure --prefix=/apps/INTEL/R --enable-R-shlib CC=/opt/aCC/bin/cc CXX=/opt/aCC/bin/aCC FC=/opt/fortran90/bin/f90 --prefix=/apps/INTEL/R --enable-R-shlib

Hello, I have been attempting to run a poisson glmm using lme4 for some time now and have had a lot of trouble. I would say 9 times out of 10 I receive the following warning: CHOLMOD warning: %h Error in mer_finalize(ans) : Cholmod error `not positive definite' at file:../Cholesky/t_cholmod_rowfac.c, line 432 My data are counts of microbe colony forming units (CFUs) collected from

Hi, I am getting a warning message when I am fitting a generalized linear mixed model (m1.2 below). CHOLMOD warning: matrix not positive definite Error in objective(.par, ...) : Cholmod error `matrix not positive definite' at file:../Supernodal/t_cholmod_super_numeric.c, line 614 Any idea? Thanks for your help, Reza > sessionInfo() R version 2.4.1 (2006-12-18) i386-pc-mingw32

Hi all, I have trouble to compile Matrix packages on Solar10 x86-64 with Sun compilers. I saw some postings on this but am not sure how to solve this problem. It is becoming critical as I cannot install biocLite() because of its dependency on Matrix. Could you direct me how to resolve the issue? Thanks in advance! Dongseok R version 2.8.1 (2008-12-22) Copyright (C) 2008 The R Foundation for

Hi, I tried to compile rsync 2.6.2 as a 64-bit application on HP-UX 11.23. $ CC=cc CFLAGS="-Ae +DD64" configure $ make $ make check 'make check' fails with daemon mode tests with the following error message. rsync: socketpair_tcp failed (Address family not supported by protocol family). There seems to be a problem with the mixture of BSD and Posix socket specification.

I have a pretty large sparse matrix of integers: > dim(tasa) [1] 91650 37651 I need to add one to it in order to take logs, but I'm getting the following error: > tasa = log(tasa + 1) CHOLMOD error: problem too large Error in asMethod(object) : Cholmod error `problem too large' I have 2 Gb of RAM, and the current workspace is barely 300mb. Is there any workaround to this?

I have a pretty large sparse matrix of integers: > dim(tasa) [1] 91650 37651 I need to add one to it in order to take logs, but I'm getting the following error: > tasa = log(tasa + 1) CHOLMOD error: problem too large Error in asMethod(object) : Cholmod error `problem too large' I have 2 Gb of RAM, and the current workspace is barely 300mb. Is there any workaround to this?

Dear R-users, I'm new to R, so my apologies if this question doesn't make sense. I've tried the following model in lmer, and it works perfectly: model<-lmer(aphids~densroot+zone+(1|zone/site), family=quasipoisson) But if I try the exact same model with a different variable, totmas, the model looks as follows: model<-lmer(aphids~totmas+zone+(1|zone/site), family=quasipoisson)

Hi: I was trying to use apply on a sparse matrix from package Matrix, and I get the error: Error in asMethod(object) : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 106 Is there a way to apply a function to all the rows without bumping into this problem? Here is a simplified example: > dim(sm) [1] 72913 43052 > class(sm) [1] "dgCMatrix"

Hi R-help citizens, I'm having trouble making version 0.99-6 of Matrix on FreeBSD 6.0. The error message is: * Installing *source* package 'Matrix' ... ** libs gcc -I/usr/local/lib/R/include -I/usr/local/include -D__NO_MATH_INLINES -fPIC -g -O2 -c Csparse.c -o Csparse.o ... numerous lines deleted ... gcc -I/usr/local/lib/R/include -I/usr/local/include -D__NO_MATH_INLINES

Full_Name: Wolfgang Huber Version: R-2.0.1 OS: HP-UX B.11.23 ia64 Submission from: (NULL) (81.104.215.6) Hi, I hope I am not missing something basic... I am using a somewhat exotic compiler and OS, but if I understand what I am seeing the problem is more general: In src/main/plotmath.c, the following function is defined /* Thickness of rules */ static double RuleThickness() { return

All: Attached is the output file from building R 2.10.0 on RedHat Linux. I have never previously experienced any problems when building R from source with new releases. But, now I get a compile error with the Matrix package: CHOLMOD/Include/cholmod.h:87:22: error: UFconfig.h: No such file or directory make[3]: *** [CHMfactor.o] Error 1 make[3]: Leaving directory

Dear all, I ran the following model without any problem previously to the update of lme4: fm2<-lmer(data=NGud,family=poisson, seed~hab*seedtray +(1|site)+(1|site:hab)) I have 25 sites, 2 habitats ("hab") per site, 8 seedtrays per habitat (4 as control, and 4 as treatment), and I'm interested in comparing the number of seed in seedtrays as a function of the treatment and its

Hi there, I've been wanting to fit a GLMM and I'm not completely sure I'm doing things right. As I said in a previous message my response variable is continuous with many zeros, so I was having a hard time finding an appropriate error distribution. I read some previous help mails given to other people advising them to use the Tweedie distribution. I'm still not sure if this

We have released to CRAN a new version of the (recommended) package Matrix, and of package lme4 yesterday. Anyone who gets the new version of Matrix *MUST* re-install lme4 -- if (s)he is using lme4 at all. Technical details about that further below. The fact that yesterday's version number of Matrix is 0.9995875-2, indicates that Matrix' version is indeed approaching 1.0 (*), and

We have released to CRAN a new version of the (recommended) package Matrix, and of package lme4 yesterday. Anyone who gets the new version of Matrix *MUST* re-install lme4 -- if (s)he is using lme4 at all. Technical details about that further below. The fact that yesterday's version number of Matrix is 0.9995875-2, indicates that Matrix' version is indeed approaching 1.0 (*), and