search for: preprocesscor

Hi Nguyen, > Subject: [R] install "multtest" and "preprocessCore" packages in > Bioconductor library > Date: Wed, 30 Nov 2011 09:57:36 -0800 > From: UyenThao Nguyen <unguyen at tethysbio.com> > To: r-help <r-help at r-project.org> > CC: uth.nguyen at ucdavis.edu <uth.nguyen at ucdavis.edu> > > Hi All, > > I'...

...ur! Je suis en train de faire un projet utilisant Affymatrix mais j'ai un probl?me ? t?l?charger un package depuis R: une fois que je t?l?charge le package et je demande de faire "rma" ca sort l'erreur suivante et je n'ai aucune id?e de comment je pourrais faire. > library(preprocessCore) > plac.rma <- rma(plac.new) Background correcting Normalizing Calculating Expression Errore in rma(plac.new) : function 'R_subColSummarize_medianpolish_log' not provided by package 'preprocessCore' Est-ce que vous avez un conseil ? me donner? J'ai un projet ? finir et...

...packages(pkgs = pkgs, repos = repos, dependencies = >> dependencies, ... : >> installation of package 'Matrix' had non-zero exit status >> 2: In install.packages(pkgs = pkgs, repos = repos, dependencies = >> dependencies, ... : >> installation of package 'preprocessCore' had non-zero exit status >> 3: In install.packages(pkgs = pkgs, repos = repos, dependencies = >> dependencies, ... : >> installation of package 'IRanges' had non-zero exit status >> 4: In install.packages(pkgs = pkgs, repos = repos, dependencies = >> dep...

Hi, R has been built against FlexiBLAS in rawhide [1, 2]. These are the R packages that need to be rebuilt: R-ape-0:5.4-2.fc33.x86_64 R-expm-0:0.999.4-7.fc33.x86_64 R-gee-0:4.13.20-4.fc33.x86_64 R-gss-0:2.2.2-3.fc33.x86_64 R-igraph-0:1.2.5-3.fc33.x86_64 R-msm-0:1.6.8-5.fc33.x86_64 R-preprocessCore-0:1.50.0-4.fc33.x86_64 R-qtl-0:1.46.2-4.fc33.x86_64 R-quadprog-0:1.5.8-5.fc33.x86_64 Could somebody with provenpackager superpowers bump the release and rebuild them, please? Thanks in advance! [1] https://src.fedoraproject.org/rpms/R/pull-request/5 [2] https://fedoraproject.org/wiki/Changes/Fle...

...Welcome to Bioconductor Vignettes contain introductory material. To view, type 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation("pkgname")'. Loading required package: gcrma Loading required package: preprocessCore Attaching package: 'affyPLM' The following object(s) are masked from 'package:stats': resid, residuals, weights *** caught segfault *** address 0xc609000, cause 'memory not mapped' Traceback: 1: .Call("rma_c_complete", probeintensities$pm, pNList, ngen...

Hi All, I am using normalize.quantiles (package preprocessCore) to process a 8300 row x 96 col matrix, all numerical data. When I limit the input matrix to 8300 x 67, the function works fine and my data is normalized. But when I increase the input matrix size to 8300 x 68, the function processes but instead of giving normalized data, it gives me all the sam...

...Lade nötiges Paket: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Lade nötiges Paket: gcrma Lade nötiges Paket: preprocessCore Attache Paket: 'affyPLM' The following object(s) are masked from package:affyAnalysis : preprocess The following object(s) are masked from package:stats : resid, residuals, weights The preprocess command in the affyPLM package needs an affybatch object...

...to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Le chargement a n?cessit? le package : affyio Le chargement a n?cessit? le package : preprocessCore > > sessionInfo() R version 2.6.0 (2007-10-03) i386-pc-mingw32 locale: LC_COLLATE=French_France.1252;LC_CTYPE=French_France.1252;LC_MONETARY=French_France.1252;LC_NUMERIC=C;LC_TIME=French_France.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base A...

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...ural Networks and Multinomial Log-Linear Models pamr Pam: prediction analysis for microarrays ppiData A package that contains the bait to prey directed graphs for protein-protein interactions. preprocessCore A collection of pre-processing functions R.matlab Read and write of MAT files together with R-to-Matlab connectivity R.oo R object-oriented programming with or without references randomForest Brei...

...;)'' and for packages ''citation(pkgname)''. > library(pdInfoBuilder) Loading required package: RSQLite Loading required package: DBI Loading required package: affxparser Loading required package: oligo Loading required package: splines Loading required package: preprocessCore Loading required package: AnnotationDbi Loading required package: oligoClasses oligo Package - Series 1.5.x > setwd("D:/Anne-Marie/Doctorat/puces ADN macrophages/puces rat/Annie Dube/Analyse") > transFile <- "RaGene-1_0-st-v1.na27.rn4.transcript.csv1/RaGene-1_0-st-v1.n...

...-nanotime * R-ncdf4 * R-NISTunits * R-nws * R-nycflights13 * R-openssl * R-orcutt * R-packrat * R-parsedate * R-pbdRPC * R-pbdZMQ * R-pdftools * R-pillar * R-pingr * R-pkgbuild * R-pkgconfig * R-pkgdown * R-pkgload * R-plogr * R-pls * R-plyr * R-png * R-poLCA * R-polyclip * R-polynom * R-praise * R-preprocessCore * R-prettycode * R-prettydoc * R-prettyunits * R-processx * R-progress * R-promises * R-ps * R-purrr * R-qcc * R-qpdf * R-qtl * R-quadprog * R-quantities * R-qvalue * R-R6 * R-rappdirs * R-R.cache * R-rcmdcheck * R-RColorBrewer * R-Rcompression * R-Rcpp * R-RcppCCTZ * R-RCurl * R-R.devices * R-rea...

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is