search for: lblas

...ers, and if we should spend any time looking in to ways in which the configure/build/install code could be modified to allow a standard install. Notes on building R under cygwin: export FFLAGS=-O3 export CFLAGS=-O3 export CXXFLAGS=-O3 export OBJCFLAGS=-O3 export FCFLAGS=-O3 export LDFLAGS='-lblas -lg2c -lintl' export R_OSTYPE=unix ./configure --prefix=/opt/freeware/R/R-2.5.1 \ --with-tcl-config=/usr/lib/tclConfig.sh \ --with-tk-config=/usr/lib/tkConfig.sh \ --with-blas=-lblas \ --with-lapack=-llapack \ --enable-R-shlib comment out Win32 in src/include/config.h and set Unix to 1, c...

...n a computer where I haven't root privilegues, and R is already installed. The system manager is extremely busy and at the moment I'm afraid that I have to manage my own installations. So, I am trying to install 'quadprog' and I'm getting the message: /usr/bin/ld: cannot find -lblas collect2: ld returned 1 exit status make: *** [quadprog.so] Error 1 ERROR: compilation failed for package 'quadpr on the other hand in the system there is a /usr/lib64/libblas.so.3 but not a libblas.so. Thus I've created the soft link in my $HOME/lib/libblas.so and set LD_LIBRARY_PATH=$HOM...

R is having trouble finding some of the things it needs to compile. In particular, I'm getting messages saying that it can't find things it wants in -lblas, -ldxml, -ldnet, and -ldnet_stub. It also can't find dl.h, ieeefp.h, and ieee754.h. I can't figure out whether these things are included with R somewhere and I need to tell it where to look, or they're not included and I need to get them. I also can't figure out where I would set...

...u 32-bit system. I looked a little further into the issue and discovered that the /usr/lib/R/etc/Makeconf files are different on the 32-bit and 64-bit Ubuntu packages maverick/r-base-core_2.12.1-1maverick0_i386.deb and the corresponding 64-bit version. The Make variable BLAS_LIBS is defined as -lblas on the 64-bit system $ egrep BLAS /etc/R/Makeconf BLAS_LIBS = -lblas but on the 32-bit system it is defined as -lf77blas -latlas

...dition to these subroutines, there are other Lapack and Blas subroutines involved. There is no problem to compile and run these files using g77, such as the following to create car: g77 -mieee-fp -fPIC -O2 -g -pipe -march=i386 -mcpu=i686 car isamax.f, sgefa.f sgesl.f foo1.f ... foo20.f -llapack -lblas By doing this, the procedure does not use subroutines isamax.f, sgefa.f sgesl.f in BLAS, as expected. In fact, there are problems to use these subroutines in BLAS, for some reason. Now what I want is to build an R library. The Makefile is the following: LIBNAME=car PKG_LIBS = $(LAPACK_LIBS) $(...

...is machine so no control on how R was installed itself. It looks like it cannot find blas libs, the only ones i can find on the machine are: /usr/lib64/libblas.so.3 -> libblas.so.3.0.3 /usr/lib64/libblas.so.3.0 -> libblas.so.3.0.3 /usr/lib64/libblas.so.3.0.3 and : $ R CMD config BLAS_LIBS -lblas Any ideas how to get this package to install? (sessionInfo() at the bottom of email) thanks for any help adam > install.packages("gee") Installing package(s) into ?/homedirs4/sghms/medmicro/users/awitney/R/x86_64-redhat-linux-gnu-library/2.12? (as ?lib? is unspecified) trying URL &...

I can't compile R-alpha on AMD 64. Rather than include a 1400 line script I have put it on the web http://www.stat.umn.edu/~charlie/typescript.txt way down near the bottom it fails building lapack.so gcc -shared -L/usr/local/lib64 -o lapack.so Lapack.lo -llapack -lblas -lg2c -lm -lgcc_s /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/bin/ld: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/liblapack.a(dgecon.i): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with...

.../Intel/mkl/10.0.1.014/lib/em64t/libmkl_core.a -Wl,--end-group -liomp5 -lguide -lpthread -lgomp... no checking for dgemm_... no checking for ATL_xerbla in -latlas... yes checking for dgemm_ in -lf77blas... no checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -lessl... no checking for dgemm_ in -lblas... (cached) yes I've looked in the MKL .a files and do not actually see dgemm or dgemm_ explicitly. So this seemingly explains the result...

...APERSIZE='letter' The configuration routine returns the following errors: checking for cblas_cdotu_sub in vecLib framework... no checking for dgemm_ in -L/usr/local/atlas/lib -latlas -lf77blas... no checking for dgemm_... no checking for ATL_xerbla in -latlas... no checking for dgemm_ in -lblas... no checking for dgemm_ in -lblas... (cached) no checking for dgemm_ in -lblas... (cached) no Looking at the config.log shows the following: configure:28566: checking for dgemm_ in -L/usr/local/atlas/lib -latlas -lf77blas configure:28587: gcc -std=gnu99 -o conftest -O3 -pipe -march=native -fpic...

Hello All, While trying to install Matrix package following error message came out: /usr/bin/ld: cannot find -lblas-3 collect2: ld returned 1 exit status make: *** [Matrix.so] Error 1 ERROR: compilation failed for package 'Matrix' ** Removing '/usr/lib/R/library/Matrix' ** Restoring previous '/usr/lib/R/library/Matrix' It seems that someting is missing. Have anybody idea where we can fi...

...checking whether we are using GNU C... yes checking whether gcc accepts -g... yes checking for ATL_xerbla in -latlas... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lscs... no checking for dgemm_ in -lcomplib.sgimath... no checking for zherk in -lblas... no checking for dgemm_ in -lblas... no could not find your BLAS library ERROR: Configuration failed for package `Matrix' Where does the compiled code of BLAS have to reside? (I used blas.tgz, faq.html from http://www.netlib.org/blas/) May be it is stated in some help file, but I missed th...

...-g -O2 -std=gnu99 -c runfunc.c -o runfunc.o gcc -shared -o fMultivar.so 00A-randomF77.o 00B-GarchBEKK.o 42A-1ReggressionModelling.o 42A-2RegressionModelling.o 42A-3RegressionModelling.o 42B-RegressionTests.o 46A-VectorMatrixAddon.o 46B-MissingValues.o 47B-MultivariateDistribution.o runfunc.o -lblas-3 -lg2c -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lblas-3 collect2: ld returned 1 exit status make: *** [fMultivar.so] Error 1 ERROR: compilation failed for package 'fMultivar' ** Removing '/usr/local/lib/R/site-library/fMultivar' The downloaded packages are...

....o gfortran -fpic -g -O2 -c stoda.f -o stoda.o gfortran -fpic -g -O2 -c vmnorm.f -o vmnorm.o gcc -std=gnu99 -shared -o odesolve.so bnorm.o call_lsoda.o cfode.o dgbfa.o dgbsl.o dgefa.o dgesl.o ewset.o fdump.o fnorm.o i1mach.o intdy.o j4save.o lsoda.o odesolve_utils.o prja.o solsy.o stoda.o vmnorm.o -lblas -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -lgcc_s -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lblas collect2: ld a retourné 1 code d'état d'exécution make: *** [odesolve.so] Erreur 1 ERROR: compilation failed for package ...

Normally, I do the following to configure R for compilation on my Opteron box with ACML installed: ./configure --with-tcltk --with-blas="-L/opt/acml4.3.0/gfortran64/lib -lacml" However, when I do so, and look at Makeconf, I see BLAS_LIBS = -lblas I thought I would see BLAS_LIBS = -L/opt/acml4.3.0/gfortran64/lib -lacml Why isn't Makeconf picking up the right BLAS_LIBS (or is it? does -lblas mean its finding the right blas?). I tried LD_LIBRARY_PATH=/opt/acml4.3.0/gfortran64/lib export LD_LIBRARY_PATH and then did a new Configure,...

...obeset.o rlm_anova.o rlm.o rlm_PLM.o rlm_se.o rlm_threestep.o rma_background2.o rma_common.o rma_PLM.o rmaPLM_pseudo.o SCAB.o scaling.o threestep.o threestep_common.o threestep_PLM.o threestep_summary.o threestep_summary_methods.o transfns.o weightedkerneldensity.o -L/usr/lib64/R/lib -lRlapack -lblas -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lblas collect2: ld returned 1 exit status make: *** [affyPLM.so] Error 1 ERROR: compilation failed for package 'affyPLM' ** Removing '/usr/lib64/R/library/affyPLM' ** Restoring previous '/usr/lib64/R/library/affyPLM' The dow...

...rsion. > > I conduct the following error message: > > bash-2.05# R INSTALL Matrix_0.3-21.tar.gz > * Installing *source* package 'Matrix' ... > checking for gcc... gcc ... > ng for sgemm_... no > checking for ATL_xerbla in -latlas... no > checking for sgemm_ in -lblas... no > checking for sgemm_ in -lcxml... no > checking for sgemm_ in -ldxml... no > checking for sgemm_ in -lscs... no > checking for sgemm_ in -lcomplib.sgimath... no > checking for sgemm_ in -lblas... (cached) no > checking for sgemm_ in -lblas... (cached) no > configure: err...

...o sinerp.o g77 -fpic -g -O2 -c splsm.f -o splsm.o g77 -fpic -g -O2 -c sslvrg.f -o sslvrg.o g77 -fpic -g -O2 -c stxwx.f -o stxwx.o gcc -shared -o gam.so backfit.o backlo.o bsplvd.o bvalue.o bvalus.o linear.o loessc.o loessf.o lo.o qsbart.o sbart.o sgram.o sinerp.o splsm.o sslvrg.o stxwx.o -lblas-3 -lg2c -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lblas-3 collect2: ld returned 1 exit status make: *** [gam.so] Error 1 ERROR: compilation failed for package 'gam' ** Removing '/usr/local/lib/R/site-library/gam' The downloaded packages are in /tmp/RtmpQmwp...

...FreeBSD 4.4. I've tried setting LD_LIBRARY_PATH to /usr/local/lib and some other things. The packages I've had trouble with are: Matrix 0.3.15 RODBC 0.8.3 RSPython 0.3 Matrix could not find my BLAS library: checking for dgemm_ in -lcomplib.sgimath... no checking for zherk in -lblas... no checking for dgemm_ in -lblas... no could not find your BLAS library ERROR: Configuration failed for package `Matrix' I solved the problem with Matrix by adding -L/usr/local/lib to the 'FLIBS' variable in $RHOME/etc/Makeconf. Then, it found the library and installe...

.../include -DNDEBUG -fpic -O3 -pipe -g -c StreitbergRoehmel.c -o StreitbergRoehmel.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c vandeWiel.c -o vandeWiel.o gcc -std=gnu99 -shared -o coin.so Classes.o Helpers.o LinearStatistic.o StreitbergRoehmel.o vandeWiel.o -lblas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lblas collect2: ld returned 1 exit status make: *** [coin.so] Error 1 ERROR: compilation failed for package ?coin? * removing ?/home/sven/R/i686-pc-linux-gnu-library/2.15/coin? Warning in install.packages : installation of package ?coi...

...repositories. When I try to install RcppArmadillo from CRAN I get: > install.packages('RcppArmadillo', lib='~/myRlibs') [...] g++ -shared -o RcppArmadillo.so RcppArmadillo.o fastLm.o -L/home/matias/myRlibs/Rcpp/lib -lRcpp -Wl,-rpath,/home/matias/myRlibs/Rcpp/lib -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -llapack I believe this means I don't have lapack available to link to. Does anybody know how I can fix this? I really only need to have RcppArmadillo running. I'm not a power user. I'm running: > version...