Hi, I tried to install fMultivar package but an error occurs that I could not understand. (I've been worked with linux / Ubuntu 6.06 LTS)> install.packages("fMultivar")Warning in install.packages("fMultivar") : argument 'lib' is missing: using /usr /local/lib/R/site-library --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://lmq.esalq.usp.br/CRAN/src/contrib/fMultivar_221.10065.tar.gz' Content type 'application/x-gzip' length 1152747 bytes opened URL ================================================== downloaded 1125Kb * Installing *source* package 'fMultivar' ... ** libs gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 00A-randomF77.c -o 00A-randomF77.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 00B-GarchBEKK.c -o 00B-GarchBEKK.o g77 -fpic -g -O2 -c 42A-1ReggressionModelling.f -o 42A-1ReggressionModelling.o g77 -fpic -g -O2 -c 42A-2RegressionModelling.f -o 42A-2RegressionModelling.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 42A-3RegressionModelling.c -o 42A-3RegressionModelling.o g77 -fpic -g -O2 -c 42B-RegressionTests.f -o 42B-RegressionTests.o g77 -fpic -g -O2 -c 46A-VectorMatrixAddon.f -o 46A-VectorMatrixAddon.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 46B-MissingValues.c -o 46B-MissingValues.og77 -fpic -g -O2 -c 47B-MultivariateDistribution.f -o 47B-MultivariateDistribution.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c runfunc.c -o runfunc.o gcc -shared -o fMultivar.so 00A-randomF77.o 00B-GarchBEKK.o 42A-1ReggressionModelling.o 42A-2RegressionModelling.o 42A-3RegressionModelling.o 42B-RegressionTests.o 46A-VectorMatrixAddon.o 46B-MissingValues.o 47B-MultivariateDistribution.o runfunc.o -lblas-3 -lg2c -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lblas-3 collect2: ld returned 1 exit status make: *** [fMultivar.so] Error 1 ERROR: compilation failed for package 'fMultivar' ** Removing '/usr/local/lib/R/site-library/fMultivar' The downloaded packages are in /tmp/RtmpXxDoFd/downloaded_packages Warning message: installation of package 'fMultivar' had non-zero exit status in: install.packages("fMultivar")>Thanks in advance for any help! Gilberto.
Just a few tip, I don't know very much about ubuntu. Relevant is:> /usr/bin/ld: cannot find -lblas-3It means, it doesn't find the library blas-3 (libblas-3). Maybe they are installed on your system but in a non-standard dir. Look around ("locate blas", if updatedb is set on your system); if you find them, a symlink could fix the issue; if not, maybe you need to install atlas or the atlas-dev, something like: http://packages.ubuntulinux.org/dapper/devel/atlas3-sse2-dev (sorry, I don't know if "dapper" == 6.06, but I don't think it can vary so much) Just give a try, and use apt to download all the required libs. Try also to add "dependencies=TRUE" to install.packages(). Does it help? Scionforbai
On Wed, Dec 13, 2006 at 09:34:04AM -0300, gsmatos1 wrote: Content-Description: Mail message body> Hi, > > I tried to install fMultivar package but an error occurs that I could not > understand. > (I've been worked with linux / Ubuntu 6.06 LTS)This would be quicker: $ sudo apt-get install r-cran-fmulitvar (if you enabled the Universe repositories in /etc/apt/sources.list).> > install.packages("fMultivar") > Warning in install.packages("fMultivar") : argument 'lib' is missing: using > /usr /local/lib/R/site-library > --- Please select a CRAN mirror for use in this session --- > Loading Tcl/Tk interface ... done > trying URL > 'http://lmq.esalq.usp.br/CRAN/src/contrib/fMultivar_221.10065.tar.gz' > Content type 'application/x-gzip' length 1152747 bytes > opened URL > ================================================== > downloaded 1125Kb > > * Installing *source* package 'fMultivar' ... > ** libs > gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 > -std=gnu99 -c 00A-randomF77.c -o 00A-randomF77.o > gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 > -std=gnu99 -c 00B-GarchBEKK.c -o 00B-GarchBEKK.o > g77 -fpic -g -O2 -c 42A-1ReggressionModelling.f -o > 42A-1ReggressionModelling.o > g77 -fpic -g -O2 -c 42A-2RegressionModelling.f -o > 42A-2RegressionModelling.o > gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 > -std=gnu99 -c 42A-3RegressionModelling.c -o 42A-3RegressionModelling.o > g77 -fpic -g -O2 -c 42B-RegressionTests.f -o 42B-RegressionTests.o > g77 -fpic -g -O2 -c 46A-VectorMatrixAddon.f -o 46A-VectorMatrixAddon.o > gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 > -std=gnu99 -c 46B-MissingValues.c -o 46B-MissingValues.og77 -fpic -g -O2 > -c 47B-MultivariateDistribution.f -o 47B-MultivariateDistribution.o > gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 > -std=gnu99 -c runfunc.c -o runfunc.o > gcc -shared -o fMultivar.so 00A-randomF77.o 00B-GarchBEKK.o > 42A-1ReggressionModelling.o 42A-2RegressionModelling.o > 42A-3RegressionModelling.o 42B-RegressionTests.o 46A-VectorMatrixAddon.o > 46B-MissingValues.o 47B-MultivariateDistribution.o runfunc.o -lblas-3 -lg2c > -lm -lgcc_s -L/usr/lib/R/lib -lR > /usr/bin/ld: cannot find -lblas-3 > collect2: ld returned 1 exit status > make: *** [fMultivar.so] Error 1 > ERROR: compilation failed for package 'fMultivar' > ** Removing '/usr/local/lib/R/site-library/fMultivar' > > The downloaded packages are in > /tmp/RtmpXxDoFd/downloaded_packages > Warning message: > installation of package 'fMultivar' had non-zero exit status in: > install.packages("fMultivar")It is a FAQ for Debian and Ubuntu -- you "forgot" to install r-base-dev which provides a fairly complete development emv. for R on Debian / Ubuntu, so do $ sudo apt-get install r-base-dev Besides, given that there _is_ a source package, you could also use its information on Build-Dependencies: $ sudo apt-get build-dep r-cran-fmultivar Hth, Dirk> > > > Thanks in advance for any help! > Gilberto. > >> ______________________________________________ > R-help at stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.-- Hell, there are no rules here - we're trying to accomplish something. -- Thomas A. Edison
Hello, I tried the first issue of Dirk and it was all right:>This would be quicker: > > $ sudo apt-get install r-cran-fmulitvar >(I've already had enabled the Universe repositories in /etc/apt/sources.list. ) I think it was realy related with some lib and packages dependencies. Thank's for all! Gilberto. Em (10:18:04), Dirk Eddelbuettel escreveu:>On Wed, Dec 13, 2006 at 09:34:04AM -0300, gsmatos1 wrote: >Content-Description: Mail message body >> Hi, >> >> I tried to install fMultivar package but an error occurs that I could not >> understand. >> (I've been worked with linux / Ubuntu 6.06 LTS) > >This would be quicker: > > $ sudo apt-get install r-cran-fmulitvar > >(if you enabled the Universe repositories in /etc/apt/sources.list). > >> > install.packages("fMultivar")...>> trying URL >> 'http://lmq.esalq.usp.br/CRAN/src/contrib/fMultivar_221.10065.tar.gz' >> Content type 'application/x-gzip' length 1152747 bytes >> opened URL >> ================================================== >> downloaded 1125Kb >> >> * Installing *source* package 'fMultivar' ... >> ** libs >> gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 >> -std=gnu99 -c 00A-randomF77.c -o 00A-randomF77.o >> gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 >> -std=gnu99 -c 00B-GarchBEKK.c -o 00B-GarchBEKK.o >> g77 -fpic -g -O2 -c 42A-1ReggressionModelling.f -o >> 42A-1ReggressionModelling.o >> g77 -fpic -g -O2 -c 42A-2RegressionModelling.f -o >> 42A-2RegressionModelling.o >> gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 >> -std=gnu99 -c 42A-3RegressionModelling.c -o 42A-3RegressionModelling.o >> g77 -fpic -g -O2 -c 42B-RegressionTests.f -o 42B-RegressionTests.o >> g77 -fpic -g -O2 -c 46A-VectorMatrixAddon.f -o 46A-VectorMatrixAddon.o >> gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 >> -std=gnu99 -c 46B-MissingValues.c -o 46B-MissingValues.og77 -fpic -g >-O2 >> -c 47B-MultivariateDistribution.f -o 47B-MultivariateDistribution.o >> gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 >> -std=gnu99 -c runfunc.c -o runfunc.o >> gcc -shared -o fMultivar.so 00A-randomF77.o 00B-GarchBEKK.o >> 42A-1ReggressionModelling.o 42A-2RegressionModelling.o >> 42A-3RegressionModelling.o 42B-RegressionTests.o 46A-VectorMatrixAddon.o >> 46B-MissingValues.o 47B-MultivariateDistribution.o runfunc.o -lblas-3 >-lg2c >> -lm -lgcc_s -L/usr/lib/R/lib -lR >> /usr/bin/ld: cannot find -lblas-3 >> collect2: ld returned 1 exit status >> make: *** [fMultivar.so] Error 1 >> ERROR: compilation failed for package 'fMultivar' >> ** Removing '/usr/local/lib/R/site-library/fMultivar' >> >> The downloaded packages are in >> /tmp/RtmpXxDoFd/downloaded_packages >> Warning message: >> installation of package 'fMultivar' had non-zero exit status in: >> install.packages("fMultivar") > >It is a FAQ for Debian and Ubuntu -- you "forgot" to install >r-base-dev which provides a fairly complete development emv. for R on >Debian / Ubuntu, so do > > $ sudo apt-get install r-base-dev > >Besides, given that there _is_ a source package, you could also use >its information on Build-Dependencies: > > $ sudo apt-get build-dep r-cran-fmultivar > >Hth, Dirk > >> > >> >> Thanks in advance for any help! >> Gilberto. >> >> > >> ______________________________________________ >> R-help em stat.math.ethz.ch mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > >-- >Hell, there are no rules here - we're trying to accomplish something. > -- Thomas A. Edison > >______________________________________________ >R-help em stat.math.ethz.ch mailing list >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guidehttp://www.R-project.org/posting-guide.html>and provide commented, minimal, self-contained, reproducible code. > >----------