search for: dfci

...e directories appear. However, df -h is still incorrect. I'm not sure exactly where to start on this. Here's the volume info: Volume Name: macf-mirror Type: Distributed-Replicate Status: Started Number of Bricks: 3 x 2 = 6 Transport-type: tcp Bricks: Brick1: cortex-dr-001.dfci.harvard.edu:/mnt/data01 Brick1: cortex-dr-002.dfci.harvard.edu:/mnt/data01 Brick1: cortex-dr-001.dfci.harvard.edu:/mnt/data02 Brick1: cortex-dr-002.dfci.harvard.edu:/mnt/data02 Brick1: cortex-dr-001.dfci.harvard.edu:/mnt/data03 Brick1: cortex-dr-002.dfci.harvard.edu:/mnt/data03 A df -h on...

...vecLib' --with-lapack --with-ICU \ --with-aqua --enable-R-framework --enable-R-shlib Got the following error: Configure: error: C compiler cannot create executables I have attached the compile.log file. I would really appreciate some help. Raktim Bioinformatics Engineer DFCI, Harvard Med School Boston The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/compl...

In the "filled bands" part of xYplot of the Hmisc package, is there a way to have multiple bands with multiple lines? or does it just allow one for now? So I had an example bit ago had a made up line and CI, now if I wanted to make a second line with a CI filled in can I put them on the same plot? x<-seq(1,10,1) y<-seq(1,10,1) ci<-y*.10 ciupper<-y+ci

Hi there, I am a bioinformatician working in DFCI. I am new to R. Yesterday I installed the R-1.7.1 to my Linux (since I am not able to find R-1.8 on the webpage). But I have some package installation problems ... 1. install.packages2() function isn't available. If I type at R prompt: >install.packages2("Biobase") Error: couldn&...

Full_Name: Nicolas Simonis Version: 2.6.1 OS: windows Submission from: (NULL) (155.52.10.223) Very funny bug : > 0.6<0.6 [1] FALSE > 0.6<0.4+0.2 [1] TRUE control : > 0.7<0.7 [1] FALSE > 0.7<0.4+0.3 [1] FALSE With R 2.6.1 windows. it's not doing it with R 2.3.1 linux...

...-------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: not yet | | Harvard School of Public Health email: rgentlem@jimmy.dfci.harvard.edu | +---------------------------------------------------------------------------+ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or &quo...

...------------------------------------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B28 | Harvard School of Public Health email: rgentlem@jimmy.dfci.harvard.edu | +---------------------------------------------------------------------------+ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or &quo...

It was my fault, as you have seen. Y matrix must contain successes and failures, and not successes and trials. Sorry for my ignorance and thanks a lot for your help. Oscar -------------- next part -------------- An HTML attachment was scrubbed... URL: https://stat.ethz.ch/pipermail/r-help/attachments/20001220/341c2519/attachment.html

I have a, no doubt, simple question. I wish to write a function such that a <- 9 b <- 10 changer _ function(x,y) { if (y>x){ x <<- Y+1}} Of course there are easier ways to accomplish the task above, but I am more interested in how to have the "x <<- Y+1" part of the function to change x in place for purposes of a much larger function. I have been wrestling with

...phone : (617) 632-5250 > > | > > | Associate Professor fax: (617) 632-2444 > > | > > | Department of Biostatistics office: M1B28 > > | Harvard School of Public Health email: > > rgentlem at jimmy.dfci.harvard.edu | > > +------------------------------------------------------------- > > --------------+ > > > > -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-. > -.-.-.-.-.-.-.-.- > r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ...

Dear all, Does anyone knows how I could extract the p-value in: > survdiff(Surv(tempo,status) ~ grupo,data=dados1,rho=1) Call: survdiff(formula = Surv(tempo, status) ~ grupo, data = dados1, rho = 1) N Observed Expected (O-E)^2/E (O-E)^2/V grupo=1 21 5.12 12.00 3.94 14.5 grupo=2 21 14.55 7.68 6.16 14.5 Chisq= 14.5 on 1 degrees of freedom,

Hello! I don't know if there is some R-package able to associate ontology to a long list of GeneBank Name (a txt-tab file or an XML file), i.e. I would as output a formatted file with 4 columns (1:GeneBank Name 2,3,4:ontology). I know that I have to perform a mapping of genes, I got a look on AnnBuilder pkg, but I 've not idea from where to start. Some suggestion? Thanks in advance!

...Gentleman phone : (617) 632-5250 | > | Associate Professor fax: (617) 632-2444 | > | Department of Biostatistics office: M1B20 | > | Harvard School of Public Health email: rgentlem at jimmy.dfci.harvard.edu | > +---------------------------------------------------------------------------+ >

...Gentleman phone : (617) 632-5250 | > | Associate Professor fax: (617) 632-2444 | > | Department of Biostatistics office: M1B20 | > | Harvard School of Public Health email: rgentlem at jimmy.dfci.harvard.edu | > +---------------------------------------------------------------------------+ >

Hello: I am using R 1.9.1 under windows. I am interested in the permax package for analyzing DNA microarray data. I see, from install.packages(), that the windows binary version is 1.2.1, but that source code exists for version 2.2. Version 2.2 has much more functionality, especially for clustered data. So, I wonder whether anyone has made a binary windows release for version 2.2 of this

Dear List, I'm looking for some documentation about the R tcltk package The one I found in the help doesn't look exaustive, I need information on the use of the single tk widget, maybe with some examples thank you, simone gabbriellini

Dear all, First I apologize for cross-posting, but I think that this could be of interest to BioC users, too. For DNA copy-number analysis I have downloaded PLASQ500K from: http://genome.dfci.harvard.edu/~tlaframb/PLASQ/ After creating sub-directories SND and STD containing 3 Sty Mapping arrays each, I tried to compute parent-specific copy number: > library(PLASQ500K) > psCN <- pscn(StyFolder="STD",normStyFolder="SND",betasSty=NULL,quantSty=NULL,betasSty Fi...

This is in R 1.1.1 and "R-devel" : > options(width = 10) ; pi [1] [1] 3.141593 Note the extra "[1]". -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject

...------------------------------------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B28 | Harvard School of Public Health email: rgentlem@jimmy.dfci.harvard.edu | +---------------------------------------------------------------------------+ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or &quo...

...t Gentleman phone : (617) 632-5250 > | > | Associate Professor fax: (617) 632-2444 > | > | Department of Biostatistics office: M1B28 > | Harvard School of Public Health email: > rgentlem@jimmy.dfci.harvard.edu | > +----------------------------------------------------------- > ----------------+ > LEGAL NOTICE Unless expressly stated otherwise, this message is confidential and may be privileged. It is intended for the addressee(s) only. Access to this E-mail by anyone else i...