search for: dchdc

Hi Everyone, I have modified my version of R-1.4.1 to include choleski with pivoting (like in Splus). I thought R-core might consider including this in the next version of R, so I give below the steps required to facilitate this. 1. Copied Linpack routine "dchdc.f" into src/appl 2. Inserted line F77_SUBROUTINE(dchdc) in src/appl/ROUTINES 3. Inserted "dchdc.f" into SOURCES_F in appl/Makefile.in 4. Modifed src/library/base/R/chol.R (attached) and src/library/base/man/chol.Rd (also attached) 5. Tidied up. Removed "chol.f", &quot...

...hz.ch/pipermail/r-sig-debian/2012-August/001935.html After running that script, the error message I get is: `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lquadmath -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n /usr/bin/ld: ../appl/dchdc.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC ../appl/dchdc.o: error adding symbols: Bad value collect2: error: ld returned 1 exit status make[3]: *** [libR.so] Error 1 make[3]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/s...

...ust/001935.html > > > After running that script, the error message I get is: > > `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a > -lblas -lgfortran -lm -lquadmath -lreadline -lpcre -llzma -lbz2 -lz > -lrt -ldl -lm -licuuc -licui18n > /usr/bin/ld: ../appl/dchdc.o: relocation R_X86_64_32 against `.rodata' > can not be used when making a shared object; recompile with -fPIC > ../appl/dchdc.o: error adding symbols: Bad value > collect2: error: ld returned 1 exit status > make[3]: *** [libR.so] Error 1 > make[3]: Leaving directory `/home/hza...

...een: rm -f libappl.a false cr libappl.a approx.o bakslv.o bandwidths.o binning.o chull.o cpoly.o cumsum.o fft.o fmin.o integrate.o interv.o lbfgsb.o loglin.o lowess.o machar.o maxcol.o massdist.o pretty.o rcont.o rowsum.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o lminfl.o blas.o zgemm.o make[3]: *** [libappl.a] Error 1 make[3]: Leaving directory `/home/gruen/Applications/R-2.0.1/src/appl' make[2]: *** [R] Error 2 make[2]: Leavin...

Hi, I'm writing an R package using the C code i've written. I'm wondering if anyone knows an easy way to calculate an inverse and cholesky factor of a matrix using the Fortran/C library of R: and how to call them from C. My code is based on the Numerical Reciepe code, and I'm trying to use something that is already in R. Thanks for your help in advance, Kosuke

...ion.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -L"../../lib" -lRblas -lgfortran -lm -lquadmath -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n /usr/bin/x86_64-linux-gnu-ld: ../appl/dchdc.o: relocation R_X86_64_32 against `.rodata' can not be used when making a PIE object; recompile with -fPIC /usr/bin/x86_64-linux-gnu-ld: ../appl/dpbfa.o: relocation R_X86_64_32 against `.rodata' can not be used when making a PIE object; recompile with -fPIC /usr/bin/x86_64-linux-gnu-ld: ../...

...c -liconv ld: 0711-317 ERROR: Undefined symbol: ch2inv ld: 0711-317 ERROR: Undefined symbol: chol ld: 0711-317 ERROR: Undefined symbol: cg ld: 0711-317 ERROR: Undefined symbol: ch ld: 0711-317 ERROR: Undefined symbol: rg ld: 0711-317 ERROR: Undefined symbol: rs ld: 0711-317 ERROR: Undefined symbol: dchdc ld: 0711-317 ERROR: Undefined symbol: dpbfa ld: 0711-317 ERROR: Undefined symbol: dpbsl ld: 0711-317 ERROR: Undefined symbol: dpoco ld: 0711-317 ERROR: Undefined symbol: dpodi ld: 0711-317 ERROR: Undefined symbol: dpofa ld: 0711-317 ERROR: Undefined symbol: dposl ld: 0711-317 ERROR: Undefined symbo...

Please note that building R on Windows is documented in "R Installation and Administration", including links to external software. Particularly there is a link to texinfo which is part of Rtools. The documentation is maintained and it is a sufficient source of information for building R on Windows. https://cran.r-project.org/doc/manuals/r-release/R-admin.html

...p -fpic -march=native -O3 -pipe -fomit-frame-pointer -c zeroin.c -o zeroin.o x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c ch2inv.f -o ch2inv.o x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c chol.f -o chol.o x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dchdc.f -o dchdc.o x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dpbfa.f -o dpbfa.o x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dpbsl.f -o dpbsl.o x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dpoco.f -o dpoco.o x86_64-alpine-linux-uclibc-gfortran -fopenmp...

...IG_H -fPIC -g -O2 -c uncmin.c -o uncmin.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c zeroin.c -o zeroin.o gfortran -fPIC -g -O2 -c ch2inv.f -o ch2inv.o gfortran -fPIC -g -O2 -c chol.f -o chol.o gfortran -fPIC -g -O2 -c dchdc.f -o dchdc.o gfortran -fPIC -g -O2 -c dpbfa.f -o dpbfa.o gfortran -fPIC -g -O2 -c dpbsl.f -o dpbsl.o gfortran -fPIC -g -O2 -c dpoco.f -o dpoco.o gfortran -fPIC -g -O2 -c dpodi.f -o dpodi.o gfortran -fPIC -g -O2 -c dpofa.f -o dpofa.o gfortran -fPIC -g -O2 -c dposl.f -o dposl.o gfortran...

.../bin/cc -I. -I../../src/include -I../../src/include -I/soft/readline/v4.2.1/include -DHAVE_CONFIG_H -std1 -ieee_with_inexact -I/soft/readline/v4.2.1/include -c zeroin.c -o zeroin.o /usr/bin/f77 -fpe3 -g -c ch2inv.f -o ch2inv.o /usr/bin/f77 -fpe3 -g -c chol.f -o chol.o /usr/bin/f77 -fpe3 -g -c dchdc.f -o dchdc.o /usr/bin/f77 -fpe3 -g -c dpbfa.f -o dpbfa.o /usr/bin/f77 -fpe3 -g -c dpbsl.f -o dpbsl.o /usr/bin/f77 -fpe3 -g -c dpoco.f -o dpoco.o /usr/bin/f77 -fpe3 -g -c dpodi.f -o dpodi.o /usr/bin/f77 -fpe3 -g -c dpofa.f -o dpofa.o /usr/bin/f77 -fpe3 -g -c dposl.f -o dposl.o /usr/bin/f77 -fp...

...IG_H -fPIC -g -O2 -c uncmin.c -o uncmin.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c zeroin.c -o zeroin.o gfortran -fPIC -g -O2 -c ch2inv.f -o ch2inv.o gfortran -fPIC -g -O2 -c chol.f -o chol.o gfortran -fPIC -g -O2 -c dchdc.f -o dchdc.o gfortran -fPIC -g -O2 -c dpbfa.f -o dpbfa.o gfortran -fPIC -g -O2 -c dpbsl.f -o dpbsl.o gfortran -fPIC -g -O2 -c dpoco.f -o dpoco.o gfortran -fPIC -g -O2 -c dpodi.f -o dpodi.o gfortran -fPIC -g -O2 -c dpofa.f -o dpofa.o gfortran -fPIC -g -O2 -c dposl.f -o dposl.o gfortran...