Antti Simola
2014-Nov-12 15:20 UTC
[R] Compilation error: Rcpp and related packages - record-gcc-switches missing
Hello, I encountered problem with Linux machine (openSUSE, 3.1.1. version of R) while I tried to update the packages with update.packages(). Rcpp, RcppArmadillo and RcppEigen refused to compile because record-gcc-swtiches was missing. I don't know much about compiling and such so I didn't get any further with the problem. Enquiries to Rcpp and openSUSE experts have not solved my problem. What I learned was that -frecord-gcc-switches might be mispelled somewhere. That information did not help me to find solution. If anyone could help with this problem I would we very thankful. See the log and SessionInfo() below for more detail: Rcpp : Version 0.11.2 installed in /home/antti/R/x86_64-suse-linux-gnu-library/3.1 Version 0.11.3 available at http://ftp.eenet.ee/pub/cran Update (y/N/c)? y RcppArmadillo : Version 0.4.320.0 installed in /home/antti/R/x86_64-suse-linux-gnu-library/3.1 Version 0.4.450.1.0 available at http://ftp.eenet.ee/pub/cran Update (y/N/c)? y RcppEigen : Version 0.3.2.1.2 installed in /home/antti/R/x86_64-suse-linux-gnu-library/3.1 Version 0.3.2.2.0 available at http://ftp.eenet.ee/pub/cran Update (y/N/c)? y trying URL 'http://ftp.eenet.ee/pub/cran/src/con..._0.11.3.tar.gz <http://ftp.eenet.ee/pub/cran/src/contrib/Rcpp_0.11.3.tar.gz>' Content type 'application/x-tar' length 2169583 bytes (2.1 Mb) opened URL =================================================downloaded 2.1 Mb trying URL 'http://ftp.eenet.ee/pub/cran/src/con...450.1.0.tar.gz <http://ftp.eenet.ee/pub/cran/src/contrib/RcppArmadillo_0.4.450.1.0.tar.gz>' Content type 'application/x-tar' length 931597 bytes (909 Kb) opened URL =================================================downloaded 909 Kb trying URL 'http://ftp.eenet.ee/pub/cran/src/con...3.2.2.0.tar.gz <http://ftp.eenet.ee/pub/cran/src/contrib/RcppEigen_0.3.2.2.0.tar.gz>' Content type 'application/x-tar' length 1216536 bytes (1.2 Mb) opened URL =================================================downloaded 1.2 Mb * installing *source* package ?Rcpp? ... ** package ?Rcpp? successfully unpacked and MD5 sums checked ** libs g++ -I/usr/lib64/R/include -I../inst/include/ -I/usr/local/include -fpic -fmessage-length=0 record-gcc-switches -fstack-protector -O3 -Wall -D_FORTIFY_SOURCE=2 -funwind-tables -fasynchronous-unwind-tables -c Date.cpp -o Date.o g++: error: record-gcc-switches: No such file or directory make: *** [Date.o] Error 1 ERROR: compilation failed for package ?Rcpp? * removing ?/home/antti/R/x86_64-suse-linux-gnu-library/3.1/Rcpp? * restoring previous ?/home/antti/R/x86_64-suse-linux-gnu-library/3.1/Rcpp? * installing *source* package ?RcppArmadillo? ... ** package ?RcppArmadillo? successfully unpacked and MD5 sums checked * checking LAPACK_LIBS: divide-and-conquer complex SVD available via R-supplied LAPACK ** libs g++ -I/usr/lib64/R/include -I/usr/local/include -I"/home/antti/R/x86_64-suse-linux-gnu-library/3.1/Rcpp/include" -I../inst/include -fpic -fmessage-length=0 record-gcc-switches -fstack-protector -O3 -Wall -D_FORTIFY_SOURCE=2 -funwind-tables -fasynchronous-unwind-tables -c RcppArmadillo.cpp -o RcppArmadillo.o g++: error: record-gcc-switches: No such file or directory make: *** [RcppArmadillo.o] Error 1 ERROR: compilation failed for package ?RcppArmadillo? * removing ?/home/antti/R/x86_64-suse-linux-gnu-library/3.1/RcppArmadillo? * restoring previous ?/home/antti/R/x86_64-suse-linux-gnu-library/3.1/RcppArmadillo? * installing *source* package ?RcppEigen? ... ** package ?RcppEigen? successfully unpacked and MD5 sums checked ** libs g++ -I/usr/lib64/R/include -I/usr/local/include -I"/home/antti/R/x86_64-suse-linux-gnu-library/3.1/Rcpp/include" -I../inst/include -fpic -fmessage-length=0 record-gcc-switches -fstack-protector -O3 -Wall -D_FORTIFY_SOURCE=2 -funwind-tables -fasynchronous-unwind-tables -c RcppEigen.cpp -o RcppEigen.o g++: error: record-gcc-switches: No such file or directory make: *** [RcppEigen.o] Error 1 ERROR: compilation failed for package ?RcppEigen? * removing ?/home/antti/R/x86_64-suse-linux-gnu-library/3.1/RcppEigen? * restoring previous ?/home/antti/R/x86_64-suse-linux-gnu-library/3.1/RcppEigen? The downloaded source packages are in ?/tmp/Rtmpnx5dfE/downloaded_packages? Warning messages: 1: In install.packages(update[instlib == l, "Package"], l, contriburl contriburl, : installation of package ?Rcpp? had non-zero exit status 2: In install.packages(update[instlib == l, "Package"], l, contriburl contriburl, : installation of package ?RcppArmadillo? had non-zero exit status 3: In install.packages(update[instlib == l, "Package"], l, contriburl contriburl, : installation of package ?RcppEigen? had non-zero exit status> sessionInfo()R version 3.1.1 (2014-07-10) Platform: x86_64-suse-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.1.1 tcltk_3.1.1 tools_3.1.1 Cheer, Antti [[alternative HTML version deleted]]