Your question is hard to follow (too much genetics jargon?), and because you
posted using HTML instead of plain text your table (?) is corrupted also.
You should read [1], [2], and might consider looking at Bioconductor [3].
[1] Posting Guide, mentioned at the bottom of this email
[2]
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example
[3] http://www.bioconductor.org
---------------------------------------------------------------------------
Jeff Newmiller The ..... ..... Go Live...
DCN:<jdnewmil at dcn.davis.ca.us> Basics: ##.#. ##.#. Live
Go...
Live: OO#.. Dead: OO#.. Playing
Research Engineer (Solar/Batteries O.O#. #.O#. with
/Software/Embedded Controllers) .OO#. .OO#. rocks...1k
---------------------------------------------------------------------------
Sent from my phone. Please excuse my brevity.
On October 22, 2014 6:44:58 PM PDT, escaping <young_2304 at hotmail.com>
wrote:>Hi, everyone,
>
>I am a new R user, and was required to build several heatmaps as shown
>in attached file. To reach it, I need to normalize the RPKM data of
>exon-level expression to generate Z-score using R. The data looks like
>mpleId
>
>
> geneName
>
>
> start
>
>
> end
>
>
> rpkm
>
>
>
>
> PC10-6
>
>
> KIF1B
>
>
> 10270764
>
>
> 10270936
>
>
> 4.00059
>
>
>
>
> PC10-6
>
>
> KIF1B
>
>
> 10292308
>
>
> 10292492
>
>
> 35.3023
>
>
>
>
> PC10-6
>
>
> KIF1B
>
>
> 10316305
>
>
> 10316381
>
>
> 85.9611
>
>
>
>
> PC10-6
>
>
> KIF1B
>
>
> 10318551
>
>
> 10318730
>
>
> 64.5961
>Exons and introns are required to shown on the heatmap.
>
>Does anyone know how to do it?
>
>Thanks a lot!
>
>Yizi
>
>
>
>
>
>------------------------------------------------------------------------
>
>______________________________________________
>R-help at r-project.org mailing list
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.