Hi,
I will like to free up memory in R and make my program execute faster. At the
moment, MY PROGRAM IS VERY SLOW probably due to memory issues. Here is sample
data (Rcode is found at the end) from one simulation(I have 1000 such files to
process):?
list(c("1971 1 1GGG1 0.00 -3.68 -0.29", "1971 1 1GGG2 0.00
-8.31 0.81",
"1971 1 1GGG3 0.00-10.69 5.69", "1971 1 1GGG4 1.78 -6.96
-2.20",
"1971 1 1GGG5 2.64 -9.48 9.20", "1971 1 1GGG6 0.00 -9.74
3.73",
"1971 1 1GGG7 0.00 -8.49 3.58", "1971 1 1GGG8 0.00 -2.78
-2.92",
"1971 1 1GGG9 0.00 -9.30 0.63", "1971 1 1GG10 4.87 -5.59
3.11",
"1971 1 1GG11 0.10-12.04 10.80", "1971 1 1GG12 0.00 -5.24
-0.43",
"1971 1 1GG13 0.00 -8.82 2.88", "1971 1 1GG14 0.00-11.10
14.50",
"1971 1 1GG15 0.00 -5.54 10.12", "1971 1 1GG16 0.00 -4.54
10.48",
"1971 1 1GG17 0.00 1.68 17.28", "1971 1 1GG18 0.00 -5.79
6.64",
"1971 1 1GG19 0.00 -5.27 14.29", "1971 1 1GG20 0.00 -8.93
9.60",
"1971 1 1GG21 5.29 1.30 15.62", "1971 1 1GG22 0.00 -2.50
19.20",
"1971 1 1GG23 0.00 -7.04 15.73", "1971 1 1GG24 0.00 -8.53
11.60",
"1971 1 1GG25 0.00 -0.82 10.33", "1971 1 1GG26 0.00 -6.28
21.58",
"1971 1 1GG27 0.00 -4.73 20.56", "1971 1 1GG28 9.15 -4.38
11.70",
"1971 1 1GG29 0.00 2.91 6.94", "1971 1 1GG30 0.00 -7.27
-4.96",
"1971 1 1GG31 0.00 2.27 8.05", "1971 1 1GG32 0.00 -3.56
0.66",
"1971 1 1GG33 0.00 -0.75 5.10", "1971 1 1GG34 1.81 2.82
-1.50",
"1971 1 1GG35 0.00 -9.33 -5.15", "1971 1 1GG36 0.45 -0.41
1.59",
"1971 1 1GG37 0.00 0.54 3.06", "1971 1 1GG38 0.00 1.85
0.87",
"1971 1 1GG39 0.00 0.41 -5.11", "1971 1 1GG40 3.38
-8.04-10.43",
"1971 1 1GG41 0.00 -7.00 3.22", "1971 1 1GG42 0.00 1.44
0.52",
"1971 1 1GG43 0.00 -5.16 -4.01", "1971 1 1GG44 0.00 -0.73
-4.24",
"1971 1 1GG45 8.63 -9.15 1.35", "1971 1 1GG46 0.00-10.04
6.62",
"1971 1 1GG47 0.00 -9.67 8.25", "1971 1 1GG48 0.00-11.63
2.14",
"1971 1 1GG49 0.00-10.33 6.68", "1971 1 1GG50 0.00-12.78
3.26",
"1971 1 1GG51 9.71 -9.00 4.21", "1971 1 1GG52 2.87-11.94
6.01",
"1971 1 1GG53 0.00-13.34 4.57", "1971 1 1GG54 0.71-12.14
9.01",
"1971 1 1GG55 2.15 -9.84 1.37", "1971 1 1GG56 0.00-10.11
10.45",
"1971 1 1GG57 0.00-10.06 0.97", "1971 1 1GG58 0.00-13.06
6.45",
"1971 1 1GG59 0.00-13.17 4.48", "1971 1 1GG60 0.00-11.05
6.79",
"1971 1 1GG61 0.00-11.11 1.11", "1971 1 1GG62 0.00 -8.17
10.90",
"1971 1 1GG63 0.00-10.98 2.10", "1971 1 1GG64 0.00-12.82
6.07",
"1971 1 1GG65 0.00 -8.65 4.32", "1971 1 1GG66 0.00-11.13
3.06",
"1971 1 1GG67 0.00 -9.84 1.38", "1971 1 1GG68 1.48-13.17
-4.12",
"1971 1 1GG69 0.00-10.64 6.51", "1971 1 1GG70 0.00-12.74
1.47",
"1971 1 1GG71 0.00-12.14 9.21", "1971 1 1GG72 0.00-13.07
6.01",
"1971 1 1GG73 0.00-11.02 3.18", "1971 1 1GG74 0.00-13.81
3.39",
"1971 1 1GG75 0.00-11.53 3.23", "1971 1 1GG76 0.00-11.74
0.52",
"1971 1 1GG77 0.00 -9.95 -1.56", "1971 1 1GG78 0.00-12.34
-4.90",
"1971 1 1GG79 0.44-12.93 -3.38", "1971 1 1GG80 0.00 -7.25
1.21",
"1971 1 1GG81 0.00 -6.69 -2.24", "1971 1 1GG82 0.00 -9.39
-4.35",
"1971 1 1GG83 0.00-12.34 2.54", "1971 1 1GG84 0.00 -3.51
2.19",
"1971 1 1GG85 0.00-12.03 6.77", "1971 1 1GG86 0.00 -3.54
1.12",
"1971 1 1GG87 0.00 -8.15 -0.70", "1971 1 1GG88 0.00 -7.02
-0.51",
"1971 1 1GG89 0.00-11.05 2.15", "1971 1 1GG90 0.00-11.44
7.73",
"1971 1 1GG91 0.11-11.22 7.26", "1971 1 1GG92 0.00 -4.54
9.87",
"1971 1 1GG93 0.00 -4.72 10.68", "1971 1 1GG94 0.00 -8.55
9.54",
"1971 1 1GG95 0.19 -0.79 12.46", "1971 1 1GG96 0.00 -4.79
11.92",
"1971 1 1GG97 0.00 -5.09 10.64", "1971 1 1GG98 0.00 -4.22
15.50",
"1971 1 1GG99 0.00 -7.64 11.21", "1971 1 1G100 0.00 -2.79
11.64",
"1971 1 1G101 0.00 -1.62 13.53", "1971 1 1G102 0.00 -4.37
7.94",
"1971 1 1G103 13.88 -6.72 5.49", "1971 1 1G104 0.00 -5.19
6.39",
"1971 1 1G105 15.04 -2.39 6.86", "1971 1 1G106 0.00-12.08
-1.34",
"1971 1 1G107 0.00 -5.80 9.32", "1971 1 1G108 0.00-12.17
10.07",
"1971 1 1G109 0.00 -5.83 10.43", "1971 1 1G110 0.00 -6.29
7.37",
"1971 1 1G111 0.00-10.59 7.34", "1971 1 1G112 0.00 -3.20
9.05",
"1971 1 1G113 0.00 -7.02 11.55", "1971 1 1G114 1.21 -9.86
-2.75",
"1971 1 1G115 0.00-14.74 1.11", "1971 1 1G116 0.00 -5.25
-7.93",
"1971 1 1G117 0.00 -5.38 -4.76", "1971 1 1G118 0.00 -4.13
-0.12",
"1971 1 1G119 0.00 -8.21 -1.76", "1971 1 1G120 0.00-15.05
-1.92",
"1971 1 2GGG1 0.00 -9.93 -0.13", "1971 1 2GGG2 0.00-11.32
-2.16",
"1971 1 2GGG3 0.00-12.02 0.10", "1971 1 2GGG4 0.92-13.14
-1.17",
"1971 1 2GGG5 0.19 -8.28 -0.98", "1971 1 2GGG6 0.00 -9.40
-1.68",
"1971 1 2GGG7 0.00-10.15 4.32", "1971 1 2GGG8 0.30-11.11
4.24",
"1971 1 2GGG9 0.00-12.39 -4.05", "1971 1 2GG10 0.00-11.47
-6.93",
"1971 1 2GG11 0.00 -8.63 -2.02", "1971 1 2GG12 0.00-15.46
-1.03",
"1971 1 2GG13 0.00-13.92 -3.91", "1971 1 2GG14 0.00 -9.83
0.18",
"1971 1 2GG15 0.00-12.03 -4.69", "1971 1 2GG16 0.00 -6.67
2.08",
"1971 1 2GG17 0.00 -6.25 5.27", "1971 1 2GG18 0.00-12.58
-3.52",
"1971 1 2GG19 0.00 -5.30 3.12", "1971 1 2GG20 0.00 -6.87
-4.64",
"1971 1 2GG21 0.00 -4.62 6.34", "1971 1 2GG22 0.15 -5.88
5.35",
"1971 1 2GG23 0.00 -7.02 2.15", "1971 1 2GG24 0.12-13.33
-2.68",
"1971 1 2GG25 0.00 -2.34 10.02", "1971 1 2GG26 0.00 -6.57
2.30",
"1971 1 2GG27 0.00 -4.73 -0.28", "1971 1 2GG28 0.00 -6.22
-1.39",
"1971 1 2GG29 0.00 -8.91 20.70", "1971 1 2GG30 0.00-15.40
0.53",
"1971 1 2GG31 0.00 -8.71 18.24", "1971 1 2GG32 0.00-13.01
5.36",
"1971 1 2GG33 0.00 -8.09 10.58", "1971 1 2GG34 0.00 -9.32
6.58",
"1971 1 2GG35 0.31-17.87 -7.52", "1971 1 2GG36 0.00-14.72
1.90",
"1971 1 2GG37 0.00 -8.50 8.82", "1971 1 2GG38 0.00 -9.26
5.61",
"1971 1 2GG39 0.00-13.47 1.98", "1971 1 2GG40 0.00-18.61
-6.15",
"1971 1 2GG41 0.00-10.59 13.95", "1971 1 2GG42 0.00-10.94
9.05",
"1971 1 2GG43 0.00-13.32 13.60", "1971 1 2GG44 0.00-15.20
12.57",
"1971 1 2GG45 0.00-15.69 2.25", "1971 1 2GG46 1.84-14.36
3.01",
"1971 1 2GG47 0.00-10.36 5.18", "1971 1 2GG48 0.00 -6.97
-0.76",
"1971 1 2GG49 0.00-11.56 -1.59", "1971 1 2GG50 0.88-11.91
-8.33",
"1971 1 2GG51 0.44-11.14 6.07", "1971 1 2GG52 0.21-11.67
-1.25",
"1971 1 2GG53 0.00-11.30 -2.55", "1971 1 2GG54 0.00-11.88
2.89",
"1971 1 2GG55 0.00 -6.06 -4.93", "1971 1 2GG56 0.00-10.40
-0.51",
"1971 1 2GG57 0.00 -9.97 -3.60", "1971 1 2GG58 0.00 -8.23
3.14",
"1971 1 2GG59 0.00 -9.93 1.70", "1971 1 2GG60 0.00-13.92
4.15",
"1971 1 2GG61 0.00-12.03-10.30", "1971 1 2GG62 0.00 -7.33
-4.22",
"1971 1 2GG63 0.00-11.55-13.21", "1971 1 2GG64
0.00-12.16-12.32",
"1971 1 2GG65 0.00 -9.60-11.10", "1971 1 2GG66 0.00-10.90
-6.06",
"1971 1 2GG67 0.00-12.19-12.06", "1971 1 2GG68 0.00-15.60
-8.34",
"1971 1 2GG69 0.00 -3.31 0.27", "1971 1 2GG70 0.00-15.22
-5.89",
"1971 1 2GG71 0.00 -8.63 -5.90", "1971 1 2GG72 0.00-14.99
3.00",
"1971 1 2GG73 0.00-11.75 -3.75", "1971 1 2GG74
0.00-11.97-12.86",
"1971 1 2GG75 0.00-12.25 -3.46", "1971 1 2GG76
0.00-11.76-12.13",
"1971 1 2GG77 0.00-11.49 -9.43", "1971 1 2GG78 0.00-14.66
-8.56",
"1971 1 2GG79 0.00-15.49 -7.10", "1971 1 2GG80
0.00-14.48-16.07",
"1971 1 2GG81 0.11-12.21-15.29", "1971 1 2GG82
0.00-17.10-16.05",
"1971 1 2GG83 0.00-15.24-10.19", "1971 1 2GG84 0.00-10.14
-9.20",
"1971 1 2GG85 0.00 -7.62 -0.03", "1971 1 2GG86
0.10-10.68-11.16",
"1971 1 2GG87 0.40-20.02-14.83", "1971 1 2GG88 0.00-13.17
-4.92",
"1971 1 2GG89 0.00-15.42 -1.34", "1971 1 2GG90 0.00 -8.75
0.07",
"1971 1 2GG91 0.24-11.55 -3.52", "1971 1 2GG92 0.00-11.53
1.77",
"1971 1 2GG93 0.00 -8.91 0.84", "1971 1 2GG94 0.00-11.88
7.64",
"1971 1 2GG95 0.24 -7.16 -0.89", "1971 1 2GG96 0.00-15.64
2.48",
"1971 1 2GG97 0.00-11.90 2.21", "1971 1 2GG98 0.00-10.73
6.50",
"1971 1 2GG99 0.00 -8.61 -2.58", "1971 1 2G100 0.00-11.06
-3.27",
"1971 1 2G101 0.00 -9.02 -5.16", "1971 1 2G102
0.00-10.17-14.01",
"1971 1 2G103 0.16-15.32 -9.94", "1971 1 2G104 0.00-11.31
-9.86",
"1971 1 2G105 0.00-12.00-15.05", "1971 1 2G106 0.00-20.69
-3.77",
"1971 1 2G107 0.74-10.42-11.52", "1971 1 2G108 0.00-10.91
-5.03",
"1971 1 2G109 0.00-11.26 -9.73", "1971 1 2G110 0.00-14.79
2.21",
"1971 1 2G111 0.00 -9.31 -2.70", "1971 1 2G112 0.00-13.16
-2.77",
"1971 1 2G113 0.00-12.08 -1.78", "1971 1 2G114 0.28-18.98
-7.20",
"1971 1 2G115 0.00-21.06 -4.52", "1971 1 2G116 0.00-14.65
-8.84",
"1971 1 2G117 0.00-13.81-10.56", "1971 1 2G118
0.00-17.12-12.53",
"1971 1 2G119 0.00-15.07 -8.09", "1971 1 2G120 0.00-20.96
-3.77",
"1971 1 3GGG1 0.00-16.52 1.85", "1971 1 3GGG2 0.00-16.88
-0.03",
"1971 1 3GGG3 0.00-22.33 -6.00", "1971 1 3GGG4 0.00-16.25
2.89",
"1971 1 3GGG5 0.00-18.35 -4.39", "1971 1 3GGG6 0.00-18.79
-5.67",
"1971 1 3GGG7 0.00-14.16 1.51", "1971 1 3GGG8 0.00-17.76
-0.85",
"1971 1 3GGG9 0.00-16.45 -6.30", "1971 1 3GG10 0.00-16.25
-6.24",
"1971 1 3GG11 0.00-23.74-12.63", "1971 1 3GG12 0.00-19.31
-0.52",
"1971 1 3GG13 0.00-19.13 2.08", "1971 1 3GG14 0.00-24.46
-5.04",
"1971 1 3GG15 0.00-18.92 -0.13", "1971 1 3GG16 0.00-12.50
-3.54",
"1971 1 3GG17 0.00-13.29 -2.78", "1971 1 3GG18 0.00-18.98
-4.70",
"1971 1 3GG19 0.00-13.83 -2.44", "1971 1 3GG20
0.00-25.79-10.25",
"1971 1 3GG21 0.00-11.34 -0.66", "1971 1 3GG22 0.00-10.11
-2.83",
"1971 1 3GG23 0.00-15.43 -6.29", "1971 1 3GG24
0.00-23.01-10.25",
"1971 1 3GG25 0.00-10.67 -0.10", "1971 1 3GG26 0.00-12.69
-0.85",
"1971 1 3GG27 0.00-12.28 2.12", "1971 1 3GG28 0.00-10.84
-1.60",
"1971 1 3GG29 0.00-12.87 6.40", "1971 1 3GG30
0.00-17.11-11.62",
"1971 1 3GG31 0.00-11.18 8.41", "1971 1 3GG32 0.00-15.34
-6.13",
"1971 1 3GG33 0.30-10.22 4.38", "1971 1 3GG34 0.00 -7.67
0.55",
"1971 1 3GG35 0.00-23.97-14.95", "1971 1 3GG36 0.00-15.38
-8.96",
"1971 1 3GG37 0.00-12.40 0.59", "1971 1 3GG38 0.00-16.12
-5.61",
"1971 1 3GG39 0.00-14.92 -4.53", "1971 1 3GG40
0.00-19.95-24.96",
"1971 1 3GG41 0.00 -4.98 2.40", "1971 1 3GG42 0.00-13.02
-1.68",
"1971 1 3GG43 0.00 -8.66 -0.90", "1971 1 3GG44 0.00-18.83
-1.64",
"1971 1 3GG45 0.00-21.70 -7.68", "1971 1 3GG46 0.00-15.27
-5.41",
"1971 1 3GG47 0.00-14.05 -0.73", "1971 1 3GG48 0.00-13.93
-5.77",
"1971 1 3GG49 0.00-16.17 -4.18", "1971 1 3GG50 0.00-16.77
-7.11",
"1971 1 3GG51 0.00 -7.58 -0.51", "1971 1 3GG52 0.00-12.36
-0.10",
"1971 1 3GG53 0.00-13.30 -4.58", "1971 1 3GG54 0.00-17.50
-0.17",
"1971 1 3GG55 0.00-10.87 -4.69", "1971 1 3GG56 0.00-15.65
-4.07",
"1971 1 3GG57 0.00-10.13 -6.90", "1971 1 3GG58 0.00-10.99
-2.58",
"1971 1 3GG59 0.00-11.61 0.17", "1971 1 3GG60 0.00-16.23
-2.26",
"1971 1 3GG61 0.00-23.78 -9.75", "1971 1 3GG62
0.00-18.30-10.07",
"1971 1 3GG63 0.00-15.22-10.82", "1971 1 3GG64 0.00-26.67
-8.80",
"1971 1 3GG65 0.00-22.32-11.40", "1971 1 3GG66 0.00-20.75
-9.33",
"1971 1 3GG67 0.00-21.49 -6.17", "1971 1 3GG68 0.00-20.95
-6.75",
"1971 1 3GG69 0.00-16.59 -9.57", "1971 1 3GG70 0.00-22.90
-7.87",
"1971 1 3GG71 0.00-17.54 -7.42", "1971 1 3GG72 0.00-21.58
-5.26",
"1971 1 3GG73 0.00-13.55 -7.83", "1971 1 3GG74 0.00-21.83
-7.61",
"1971 1 3GG75 0.00-13.82 -7.70", "1971 1 3GG76 0.00-17.80
-7.74",
"1971 1 3GG77 0.00-15.44 -7.29", "1971 1 3GG78
0.00-26.86-12.66",
"1971 1 3GG79 0.00-21.57-18.33", "1971 1 3GG80
0.00-19.76-31.16",
"1971 1 3GG81 0.00-25.27-24.01", "1971 1 3GG82
0.00-19.48-17.67",
"1971 1 3GG83 0.00-28.56-21.77", "1971 1 3GG84
0.00-17.78-15.83",
"1971 1 3GG85 0.00-21.06 -5.97", "1971 1 3GG86
0.00-20.99-11.87",
"1971 1 3GG87 0.00-22.14-21.84", "1971 1 3GG88 0.00-11.99
-7.91",
"1971 1 3GG89 0.00-12.78-10.42", "1971 1 3GG90 0.00-16.86
-5.39",
"1971 1 3GG91 0.24-17.71 -5.89", "1971 1 3GG92 0.00-18.13
-9.15",
"1971 1 3GG93 0.00-18.44-11.16", "1971 1 3GG94 0.00 -8.72
-0.58",
"1971 1 3GG95 0.00-16.33-11.66", "1971 1 3GG96
0.00-23.98-16.25",
"1971 1 3GG97 0.00-16.74-10.71", "1971 1 3GG98
0.00-18.25-13.33",
"1971 1 3GG99 0.00-21.98-20.73", "1971 1 3G100
0.00-16.49-18.91",
"1971 1 3G101 0.00-18.14-13.35", "1971 1 3G102
0.00-21.92-21.30",
"1971 1 3G103 0.00-24.87-17.26", "1971 1 3G104
0.00-25.17-21.08",
"1971 1 3G105 0.00-24.43-19.17", "1971 1 3G106
0.00-16.21-14.39",
"1971 1 3G107 0.10-29.17-19.95", "1971 1 3G108
0.00-28.58-11.97",
"1971 1 3G109 0.00-26.68-19.91", "1971 1 3G110 0.00-15.17
-7.27",
"1971 1 3G111 0.00-15.67 -7.13", "1971 1 3G112
0.00-16.41-10.49",
"1971 1 3G113 0.00-17.01 -7.53", "1971 1 3G114
0.00-18.71-15.00",
"1971 1 3G115 0.00-16.51-16.38", "1971 1 3G116
0.00-11.14-17.32",
"1971 1 3G117 0.00-13.07-16.85", "1971 1 3G118
0.00-25.12-21.44",
"1971 1 3G119 0.00-11.40-13.32", "1971 1 3G120
0.00-17.84-11.70",
"1971 1 4GGG1 0.00-16.41-11.50", "1971 1 4GGG2
0.00-14.54-12.04",
"1971 1 4GGG3 0.00-16.56-11.39", "1971 1 4GGG4
0.00-13.64-12.68",
"1971 1 4GGG5 0.00-14.36 -9.21", "1971 1 4GGG6 0.00-15.84
-6.35",
"1971 1 4GGG7 0.00-14.43 -7.76", "1971 1 4GGG8
0.00-14.36-13.15",
"1971 1 4GGG9 0.00-16.85-11.71", "1971 1 4GG10 0.00-13.91
-7.79",
"1971 1 4GG11 0.00-20.93-15.64", "1971 1 4GG12 0.00-17.45
-8.60",
"1971 1 4GG13 0.00-13.19 -3.67", "1971 1 4GG14
0.00-18.00-14.84",
"1971 1 4GG15 0.00-16.38-13.05", "1971 1 4GG16
0.00-10.27-14.51",
"1971 1 4GG17 0.00 -8.83-10.29", "1971 1 4GG18
0.00-12.94-11.71",
"1971 1 4GG19 0.00-13.54 -9.55", "1971 1 4GG20
0.00-25.36-18.19",
"1971 1 4GG21 0.00 -6.97-14.26", "1971 1 4GG22 0.00 -8.44
-9.49",
"1971 1 4GG23 0.00-15.45-10.71", "1971 1 4GG24
0.00-21.18-15.86",
"1971 1 4GG25 0.00-11.38-10.29", "1971 1 4GG26 0.00
-7.77-11.42",
"1971 1 4GG27 4.34 -7.39-12.00", "1971 1 4GG28 0.00-13.22
-9.70",
"1971 1 4GG29 0.00-12.92-11.16", "1971 1 4GG30
0.00-18.76-12.76",
"1971 1 4GG31 0.00-13.27 -9.22", "1971 1 4GG32 0.00-13.94
-9.26",
"1971 1 4GG33 0.00 -9.69-13.98", "1971 1 4GG34
0.00-13.50-11.10",
"1971 1 4GG35 0.00-25.03 -9.58", "1971 1 4GG36
0.00-17.20-13.59",
"1971 1 4GG37 0.00-14.93 -9.16", "1971 1 4GG38
0.00-25.30-10.01",
"1971 1 4GG39 0.00-18.25-14.41", "1971 1 4GG40
0.00-29.68-22.25",
"1971 1 4GG41 0.00-21.96 -3.32", "1971 1 4GG42
0.00-22.86-14.12",
"1971 1 4GG43 0.00-15.78 -9.00", "1971 1 4GG44
0.00-21.51-15.96",
"1971 1 4GG45 0.00-23.04-12.33", "1971 1 4GG46 0.00-15.58
-8.41",
"1971 1 4GG47 0.00-17.54 -3.44", "1971 1 4GG48 0.00-18.56
-6.02",
"1971 1 4GG49 0.00-13.34 -3.38", "1971 1 4GG50 0.00-19.55
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"1971 1 7GG97 0.00-20.34 -5.13", "1971 1 7GG98 0.00-21.01
-8.79",
"1971 1 7GG99 0.00-26.03 -9.98", "1971 1 7G100 0.00-27.81
-9.16",
"1971 1 7G101 0.00-30.19 -6.58", "1971 1 7G102 0.00-18.98
-8.15",
"1971 1 7G103 0.00-23.02-10.54", "1971 1 7G104 0.00-29.35
-9.30",
"1971 1 7G105 0.00-29.03 -7.99", "1971 1 7G106
0.00-26.07-12.02",
"1971 1 7G107 0.00-29.85-10.43", "1971 1 7G108
0.00-28.14-11.21",
"1971 1 7G109 0.00-31.79 -8.87", "1971 1 7G110 0.00-15.18
-9.86",
"1971 1 7G111 0.00-14.84-10.51", "1971 1 7G112 0.00-24.09
-9.49",
"1971 1 7G113 0.00-20.26 -9.74", "1971 1 7G114
0.00-21.61-15.25",
"1971 1 7G115 0.00-15.76-12.42", "1971 1 7G116
0.00-24.84-23.48",
"1971 1 7G117 0.00-26.76-22.68", "1971 1 7G118
0.00-27.32-21.52",
"1971 1 7G119 0.00-17.06-16.10", "1971 1 7G120
0.00-25.24-18.54",
"1971 1 8GGG1 0.52 -8.82-12.99", "1971 1 8GGG2 0.00 -8.15
-9.43",
"1971 1 8GGG3 0.00-14.15 -7.46", "1971 1 8GGG4 0.00
-7.99-10.21",
"1971 1 8GGG5 0.00-10.95 -7.35", "1971 1 8GGG6 0.00-10.73
-5.78",
"1971 1 8GGG7 0.00-17.87-13.26", "1971 1 8GGG8
0.00-11.25-12.14",
"1971 1 8GGG9 0.00 -7.71 -7.57", "1971 1 8GG10 0.00 -5.96
-8.39",
"1971 1 8GG11 0.00-12.18 -9.80", "1971 1 8GG12 0.00
-5.65-11.28",
"1971 1 8GG13 0.00 -8.64-10.11", "1971 1 8GG14 0.00-16.86
-9.24",
"1971 1 8GG15 0.00 -7.62 -8.22", "1971 1 8GG16 0.00 -9.12
-8.42",
"1971 1 8GG17 0.00-14.96-11.73", "1971 1 8GG18 0.00 -7.98
-9.49",
"1971 1 8GG19 0.00 -9.69 -8.99", "1971 1 8GG20
0.00-15.88-11.19",
"1971 1 8GG21 0.00-17.05-10.89", "1971 1 8GG22 0.00-12.61
-7.54",
"1971 1 8GG23 0.00-10.31 -7.41", "1971 1 8GG24
0.00-10.61-10.84",
"1971 1 8GG25 0.00-14.80-10.73", "1971 1 8GG26 0.00-12.89
-6.80",
"1971 1 8GG27 0.00 -8.32 -7.55", "1971 1 8GG28 0.00 -7.69
-6.08",
"1971 1 8GG29 0.00-16.26-15.35", "1971 1 8GG30 0.00-11.48
-8.62",
"1971 1 8GG31 0.00-14.38-14.59", "1971 1 8GG32 0.00
-8.84-10.86",
"1971 1 8GG33 0.00-11.31 -8.36", "1971 1 8GG34 0.00 -9.35
-6.17",
"1971 1 8GG35 0.00 -7.08 -6.07", "1971 1 8GG36 0.00 -7.35
-8.72",
"1971 1 8GG37 0.00-16.81 -8.52", "1971 1 8GG38
0.16-21.22-11.34",
"1971 1 8GG39 0.00-15.12-10.88", "1971 1 8GG40
0.00-11.81-10.35",
"1971 1 8GG41 0.00-10.33 -2.93", "1971 1 8GG42
0.00-20.96-10.93",
"1971 1 8GG43 0.00 -4.48 -6.94", "1971 1 8GG44 0.00
-9.91-11.60",
"1971 1 8GG45 1.61-10.67 -7.68", "1971 1 8GG46 0.00 -6.14
-5.31",
"1971 1 8GG47 0.00-20.40 -5.32", "1971 1 8GG48 0.00-19.76
-7.21",
"1971 1 8GG49 0.00-12.62 -6.26", "1971 1 8GG50 2.03 -8.04
-8.00",
"1971 1 8GG51 0.00-19.30 -6.75", "1971 1 8GG52 0.00-17.53
-4.90",
"1971 1 8GG53 0.00-15.38 -8.50", "1971 1 8GG54 0.00-14.95
-8.08",
"1971 1 8GG55 0.00-12.51-11.02", "1971 1 8GG56 0.00-18.34
-7.44",
"1971 1 8GG57 0.00-13.25 -8.63", "1971 1 8GG58 0.00-18.36
-5.72",
"1971 1 8GG59 0.00-20.45 -8.17", "1971 1 8GG60 0.00-19.79
-5.55",
"1971 1 8GG61 0.00-16.70-10.56", "1971 1 8GG62
0.00-13.50-11.63",
"1971 1 8GG63 0.00 -9.26 -9.83", "1971 1 8GG64 0.00-10.19
-5.91",
"1971 1 8GG65 0.00-11.65-10.19", "1971 1 8GG66 0.00-15.19
-7.02",
"1971 1 8GG67 0.00-13.11 -9.19", "1971 1 8GG68
0.00-15.68-15.12",
"1971 1 8GG69 0.00-15.24-11.41", "1971 1 8GG70 0.00-17.16
-5.47",
"1971 1 8GG71 0.00-12.13 -9.38", "1971 1 8GG72 0.00-24.45
-8.92",
"1971 1 8GG73 0.00-13.70 -3.91", "1971 1 8GG74 0.00-11.41
-7.34",
"1971 1 8GG75 0.00-15.56 -2.72", "1971 1 8GG76 0.00-10.33
-6.15",
"1971 1 8GG77 0.00-12.97 -9.15", "1971 1 8GG78 0.00-15.55
-9.39",
"1971 1 8GG79 0.00-15.25 -8.01", "1971 1 8GG80
0.00-31.36-15.25",
"1971 1 8GG81 0.00-21.95 -9.86", "1971 1 8GG82
0.00-25.18-13.15",
"1971 1 8GG83 0.00-25.33-14.15", "1971 1 8GG84 0.00-19.11
-8.27",
"1971 1 8GG85 0.00-15.43 -4.79", "1971 1 8GG86 0.00 -8.33
-7.48",
"1971 1 8GG87 0.00-27.52-12.52", "1971 1 8GG88 0.00-21.30
-5.22",
"1971 1 8GG89 0.00-14.45-10.75", "1971 1 8GG90 0.00-15.19
-6.89",
"1971 1 8GG91 0.00-15.81 -5.03", "1971 1 8GG92 0.00-14.26
-7.98",
"1971 1 8GG93 0.00-13.90-11.03", "1971 1 8GG94 0.00-20.99
-9.83",
"1971 1 8GG95 0.00-14.62-12.60", "1971 1 8GG96
0.00-24.63-11.72",
"1971 1 8GG97 0.00-11.73-10.12", "1971 1 8GG98
0.00-18.30-13.60",
"1971 1 8GG99 0.00-16.03-13.33", "1971 1 8G100
0.00-21.05-11.34",
"1971 1 8G101 0.00-16.64-11.46", "1971 1 8G102
0.00-11.64-13.22",
"1971 1 8G103 0.00-16.60-12.60", "1971 1 8G104 0.00-20.00
-7.75",
"1971 1 8G105 0.00-15.10-10.28", "1971 1 8G106
0.00-19.21-11.95",
"1971 1 8G107 0.00-15.91 -7.70", "1971 1 8G108
0.00-15.05-13.87",
"1971 1 8G109 0.00-13.18 -9.58", "1971 1 8G110
0.00-17.82-11.81",
"1971 1 8G111 0.00-11.29 -8.49", "1971 1 8G112
0.00-13.39-10.49",
"1971 1 8G113 0.00-15.25 -9.80", "1971 1 8G114
0.10-24.97-13.28",
"1971 1 8G115 0.00-17.06 -8.99", "1971 1 8G116
0.00-34.06-20.00",
"1971 1 8G117 0.00-29.92-17.96", "1971 1 8G118
0.00-27.16-14.45",
"1971 1 8G119 0.00-24.79-19.11", "1971 1 8G120
0.15-24.52-17.37",
"1971 1 9GGG1 0.00-20.49-13.47", "1971 1 9GGG2
0.00-17.73-10.87",
"1971 1 9GGG3 0.00-18.44-16.84", "1971 1 9GGG4
0.00-18.16-14.79",
"1971 1 9GGG5 0.00-24.01-15.93", "1971 1 9GGG6
0.00-18.21-12.37",
"1971 1 9GGG7 0.00-17.94-19.30", "1971 1 9GGG8
0.00-18.51-14.07",
"1971 1 9GGG9 0.00-13.71-17.01", "1971 1 9GG10
0.10-15.29-15.46",
"1971 1 9GG11 0.00-18.69-15.79", "1971 1 9GG12
0.00-14.34-17.41",
"1971 1 9GG13 0.00-13.55-17.04", "1971 1 9GG14
0.00-22.77-15.57",
"1971 1 9GG15 0.00-13.70-18.17", "1971 1 9GG16
0.00-13.00-11.75",
"1971 1 9GG17 0.00-18.82-11.74", "1971 1 9GG18
0.00-14.45-16.14",
"1971 1 9GG19 0.00 -9.43-16.56", "1971 1 9GG20
0.00-22.20-12.81",
"1971 1 9GG21 0.00-17.16-10.77", "1971 1 9GG22
0.00-18.45-12.22",
"1971 1 9GG23 0.00-11.15-17.75", "1971 1 9GG24 0.00-18.59
-8.48",
"1971 1 9GG25 0.00-23.86-16.04", "1971 1 9GG26
0.00-16.40-12.21",
"1971 1 9GG27 0.00-19.89-13.52", "1971 1 9GG28
0.24-12.90-13.83",
"1971 1 9GG29 0.00-22.99-16.61", "1971 1 9GG30 0.00-14.12
-9.60",
"1971 1 9GG31 0.00-22.84-16.52", "1971 1 9GG32
0.00-17.42-11.11",
"1971 1 9GG33 0.00-18.01-15.11", "1971 1 9GG34
0.00-14.37-15.03",
"1971 1 9GG35 0.00-15.25-19.38", "1971 1 9GG36 0.00-12.19
-9.92",
"1971 1 9GG37 0.00-19.20-17.27", "1971 1 9GG38
0.00-32.65-12.48",
"1971 1 9GG39 0.00-24.11-16.09", "1971 1 9GG40
0.00-23.44-22.70"
))
Here is a code for processing a thousand of these kind of files:
#==================================================================================================================lst1Sub
<- data_above
lst2 <- lapply(lst1Sub,function(x) {dateSite <-
gsub("(.*G.{3}).*","\\1",x);
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? dat1 <-
data.frame(Year=as.numeric(substr(dateSite,1,4)),
Month=as.numeric(substr(dateSite,5,6)),Day=as.numeric(substr(dateSite,7,8)),Site=substr(dateSite,9,12),stringsAsFactors=FALSE);
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Sims <-
str_trim(gsub(".*G.{3}\\s?(.*)","\\1",x));Sims[grep("\\d+-",Sims)]
<- gsub("(.*)([- ][0-9]+\\.[0-9]+)","\\1
\\2",gsub("^([0-9]+\\.[0-9]+)(.*)","\\1 \\2",
Sims[grep("\\d+-",Sims)]));
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Sims1 <-
read.table(text=Sims,header=FALSE); names(Sims1) <-
c("Precipitation", "Tmin", "Tmax");dat2 <-
cbind(dat1,Sims1)})
#========================================================================================================================
1) Please use this code to free up memory considering that I am working on 1000
files, so I am in for speed.
2) Is there a faster way of doing the same task as above? My data files are
simulated in FORTRAN and read as:
data.frame(Day=as.numeric(substr(rain.data,7,8)),
? ? ? ? ? ? ? ? ? ? ? ? ?Month=as.numeric(substr(rain.data,5,6)),
? ? ? ? ? ? ? ? ? ? ? ? ?Year=as.numeric(substr(rain.data,1,4)),
? ? ? ? ? ? ? ? ? ? ? ? ?Site=substr(rain.data,9,12),
? ? ? ? ? ? ? ? ? ? ? ? Precip=as.numeric(substr(rain.data,13,18)),
? ? ? ? ? ? ? ? ? ? ? ? Tmin=as.numeric(substr(rain.data,19,24)),
? ? ? ? ? ? ? ? ? ? ? ? Tmax=as.numeric(substr(rain.data,25,30)))
#### Day occupies position 7 and 8, Month occupies position 5 and 6, Year
occupies position 1 to 4 and so on for site, precip, ####tmin and tmax
Thanks for your great help.
Zilefac.
>>>>> Zilefac Elvis <zilefacelvis at yahoo.com> >>>>> on Mon, 12 May 2014 15:01:49 -0700 writes:> Hi, > I will like to free up memory in R and make my program execute faster. At the moment, MY PROGRAM IS VERY SLOW probably due to memory issues. Here is sample data (Rcode is found at the end) from one simulation(I have 1000 such files to process):? > list(c("1971 1 1GGG1 0.00 -3.68 -0.29", "1971 1 1GGG2 0.00 -8.31 0.81", > "1971 1 1GGG3 0.00-10.69 5.69", "1971 1 1GGG4 1.78 -6.96 -2.20", > "1971 1 1GGG5 2.64 -9.48 9.20", "1971 1 1GGG6 0.00 -9.74 3.73", > "1971 1 1GGG7 0.00 -8.49 3.58", "1971 1 1GGG8 0.00 -2.78 -2.92", > "1971 1 1GGG9 0.00 -9.30 0.63", "1971 1 1GG10 4.87 -5.59 3.11", > "1971 1 1GG11 0.10-12.04 10.80", "1971 1 1GG12 0.00 -5.24 -0.43", > "1971 1 1GG13 0.00 -8.82 2.88", "1971 1 1GG14 0.00-11.10 14.50", > "1971 1 1GG15 0.00 -5.54 10.12", "1971 1 1GG16 0.00 -4.54 10.48", > "1971 1 1GG17 0.00 1.68 17.28", "1971 1 1GG18 0.00 -5.79 6.64", > "1971 1 1GG19 0.00 -5.27 14.29", "1971 1 1GG20 0.00 -8.93 9.60", > "1971 1 1GG21 5.29 1.30 15.62", "1971 1 1GG22 0.00 -2.50 19.20", > "1971 1 1GG23 0.00 -7.04 15.73", "1971 1 1GG24 0.00 -8.53 11.60", > "1971 1 1GG25 0.00 -0.82 10.33", "1971 1 1GG26 0.00 -6.28 21.58", [.............] > )) > Here is a code for processing a thousand of these kind of files: > #================================================================================================================== > lst1Sub <- data_above > lst2 <- lapply(lst1Sub,function(x) {dateSite <- gsub("(.*G.{3}).*","\\1",x); > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? dat1 <- data.frame(Year=as.numeric(substr(dateSite,1,4)), Month=as.numeric(substr(dateSite,5,6)),Day=as.numeric(substr(dateSite,7,8)),Site=substr(dateSite,9,12),stringsAsFactors=FALSE); > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Sims <- str_trim(gsub(".*G.{3}\\s?(.*)","\\1",x));Sims[grep("\\d+-",Sims)] <- gsub("(.*)([- ][0-9]+\\.[0-9]+)","\\1 \\2",gsub("^([0-9]+\\.[0-9]+)(.*)","\\1 \\2", Sims[grep("\\d+-",Sims)])); > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Sims1 <- read.table(text=Sims,header=FALSE); names(Sims1) <- c("Precipitation", "Tmin", "Tmax");dat2 <- cbind(dat1,Sims1)}) > #======================================================================================================================== > 1) Please use this code to free up memory considering that I am working on 1000 files, so I am in for speed. > 2) Is there a faster way of doing the same task as above? My data files are simulated in FORTRAN and read as: > data.frame(Day=as.numeric(substr(rain.data,7,8)), > ? ? ? ? ? ? ? ? ? ? ? ? ?Month=as.numeric(substr(rain.data,5,6)), > ? ? ? ? ? ? ? ? ? ? ? ? ?Year=as.numeric(substr(rain.data,1,4)), > ? ? ? ? ? ? ? ? ? ? ? ? ?Site=substr(rain.data,9,12), > ? ? ? ? ? ? ? ? ? ? ? ? Precip=as.numeric(substr(rain.data,13,18)), > ? ? ? ? ? ? ? ? ? ? ? ? Tmin=as.numeric(substr(rain.data,19,24)), > ? ? ? ? ? ? ? ? ? ? ? ? Tmax=as.numeric(substr(rain.data,25,30))) > #### Day occupies position 7 and 8, Month occupies position 5 and 6, Year occupies position 1 to 4 and so on for site, precip, ####tmin and tmax Given that your data file has things "at position <n>", I think you should use read.fwf() instead of read.table() and then you might not need all the string manipulations you do above. Martin > Thanks for your great help. > Zilefac.
Perhaps ?read.fwf might help
---------------------------------------------------------------------------
Jeff Newmiller The ..... ..... Go Live...
DCN:<jdnewmil at dcn.davis.ca.us> Basics: ##.#. ##.#. Live
Go...
Live: OO#.. Dead: OO#.. Playing
Research Engineer (Solar/Batteries O.O#. #.O#. with
/Software/Embedded Controllers) .OO#. .OO#. rocks...1k
---------------------------------------------------------------------------
Sent from my phone. Please excuse my brevity.
On May 12, 2014 3:01:49 PM PDT, Zilefac Elvis <zilefacelvis at yahoo.com>
wrote:>Hi,
>I will like to free up memory in R and make my program execute faster.
>At the moment, MY PROGRAM IS VERY SLOW probably due to memory issues.
>Here is sample data (Rcode is found at the end) from one simulation(I
>have 1000 such files to process):?
>
>
>
>list(c("1971 1 1GGG1 0.00 -3.68 -0.29", "1971 1 1GGG2 0.00
-8.31
>0.81",
>"1971 1 1GGG3 0.00-10.69 5.69", "1971 1 1GGG4 1.78 -6.96
-2.20",
>"1971 1 1GGG5 2.64 -9.48 9.20", "1971 1 1GGG6 0.00 -9.74
3.73",
>"1971 1 1GGG7 0.00 -8.49 3.58", "1971 1 1GGG8 0.00 -2.78
-2.92",
>"1971 1 1GGG9 0.00 -9.30 0.63", "1971 1 1GG10 4.87 -5.59
3.11",
>"1971 1 1GG11 0.10-12.04 10.80", "1971 1 1GG12 0.00 -5.24
-0.43",
>"1971 1 1GG13 0.00 -8.82 2.88", "1971 1 1GG14 0.00-11.10
14.50",
>"1971 1 1GG15 0.00 -5.54 10.12", "1971 1 1GG16 0.00 -4.54
10.48",
>"1971 1 1GG17 0.00 1.68 17.28", "1971 1 1GG18 0.00 -5.79
6.64",
>"1971 1 1GG19 0.00 -5.27 14.29", "1971 1 1GG20 0.00 -8.93
9.60",
>"1971 1 1GG21 5.29 1.30 15.62", "1971 1 1GG22 0.00 -2.50
19.20",
>"1971 1 1GG23 0.00 -7.04 15.73", "1971 1 1GG24 0.00 -8.53
11.60",
>"1971 1 1GG25 0.00 -0.82 10.33", "1971 1 1GG26 0.00 -6.28
21.58",
>"1971 1 1GG27 0.00 -4.73 20.56", "1971 1 1GG28 9.15 -4.38
11.70",
>"1971 1 1GG29 0.00 2.91 6.94", "1971 1 1GG30 0.00 -7.27
-4.96",
>"1971 1 1GG31 0.00 2.27 8.05", "1971 1 1GG32 0.00 -3.56
0.66",
>"1971 1 1GG33 0.00 -0.75 5.10", "1971 1 1GG34 1.81 2.82
-1.50",
>"1971 1 1GG35 0.00 -9.33 -5.15", "1971 1 1GG36 0.45 -0.41
1.59",
>"1971 1 1GG37 0.00 0.54 3.06", "1971 1 1GG38 0.00 1.85
0.87",
>"1971 1 1GG39 0.00 0.41 -5.11", "1971 1 1GG40 3.38
-8.04-10.43",
>"1971 1 1GG41 0.00 -7.00 3.22", "1971 1 1GG42 0.00 1.44
0.52",
>"1971 1 1GG43 0.00 -5.16 -4.01", "1971 1 1GG44 0.00 -0.73
-4.24",
>"1971 1 1GG45 8.63 -9.15 1.35", "1971 1 1GG46 0.00-10.04
6.62",
>"1971 1 1GG47 0.00 -9.67 8.25", "1971 1 1GG48 0.00-11.63
2.14",
>"1971 1 1GG49 0.00-10.33 6.68", "1971 1 1GG50 0.00-12.78
3.26",
>"1971 1 1GG51 9.71 -9.00 4.21", "1971 1 1GG52 2.87-11.94
6.01",
>"1971 1 1GG53 0.00-13.34 4.57", "1971 1 1GG54 0.71-12.14
9.01",
>"1971 1 1GG55 2.15 -9.84 1.37", "1971 1 1GG56 0.00-10.11
10.45",
>"1971 1 1GG57 0.00-10.06 0.97", "1971 1 1GG58 0.00-13.06
6.45",
>"1971 1 1GG59 0.00-13.17 4.48", "1971 1 1GG60 0.00-11.05
6.79",
>"1971 1 1GG61 0.00-11.11 1.11", "1971 1 1GG62 0.00 -8.17
10.90",
>"1971 1 1GG63 0.00-10.98 2.10", "1971 1 1GG64 0.00-12.82
6.07",
>"1971 1 1GG65 0.00 -8.65 4.32", "1971 1 1GG66 0.00-11.13
3.06",
>"1971 1 1GG67 0.00 -9.84 1.38", "1971 1 1GG68 1.48-13.17
-4.12",
>"1971 1 1GG69 0.00-10.64 6.51", "1971 1 1GG70 0.00-12.74
1.47",
>"1971 1 1GG71 0.00-12.14 9.21", "1971 1 1GG72 0.00-13.07
6.01",
>"1971 1 1GG73 0.00-11.02 3.18", "1971 1 1GG74 0.00-13.81
3.39",
>"1971 1 1GG75 0.00-11.53 3.23", "1971 1 1GG76 0.00-11.74
0.52",
>"1971 1 1GG77 0.00 -9.95 -1.56", "1971 1 1GG78 0.00-12.34
-4.90",
>"1971 1 1GG79 0.44-12.93 -3.38", "1971 1 1GG80 0.00 -7.25
1.21",
>"1971 1 1GG81 0.00 -6.69 -2.24", "1971 1 1GG82 0.00 -9.39
-4.35",
>"1971 1 1GG83 0.00-12.34 2.54", "1971 1 1GG84 0.00 -3.51
2.19",
>"1971 1 1GG85 0.00-12.03 6.77", "1971 1 1GG86 0.00 -3.54
1.12",
>"1971 1 1GG87 0.00 -8.15 -0.70", "1971 1 1GG88 0.00 -7.02
-0.51",
>"1971 1 1GG89 0.00-11.05 2.15", "1971 1 1GG90 0.00-11.44
7.73",
>"1971 1 1GG91 0.11-11.22 7.26", "1971 1 1GG92 0.00 -4.54
9.87",
>"1971 1 1GG93 0.00 -4.72 10.68", "1971 1 1GG94 0.00 -8.55
9.54",
>"1971 1 1GG95 0.19 -0.79 12.46", "1971 1 1GG96 0.00 -4.79
11.92",
>"1971 1 1GG97 0.00 -5.09 10.64", "1971 1 1GG98 0.00 -4.22
15.50",
>"1971 1 1GG99 0.00 -7.64 11.21", "1971 1 1G100 0.00 -2.79
11.64",
>"1971 1 1G101 0.00 -1.62 13.53", "1971 1 1G102 0.00 -4.37
7.94",
>"1971 1 1G103 13.88 -6.72 5.49", "1971 1 1G104 0.00 -5.19
6.39",
>"1971 1 1G105 15.04 -2.39 6.86", "1971 1 1G106 0.00-12.08
-1.34",
>"1971 1 1G107 0.00 -5.80 9.32", "1971 1 1G108 0.00-12.17
10.07",
>"1971 1 1G109 0.00 -5.83 10.43", "1971 1 1G110 0.00 -6.29
7.37",
>"1971 1 1G111 0.00-10.59 7.34", "1971 1 1G112 0.00 -3.20
9.05",
>"1971 1 1G113 0.00 -7.02 11.55", "1971 1 1G114 1.21 -9.86
-2.75",
>"1971 1 1G115 0.00-14.74 1.11", "1971 1 1G116 0.00 -5.25
-7.93",
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4.24",
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0.18",
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2.08",
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5.35",
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2.30",
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0.53",
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5.36",
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6.58",
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1.90",
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5.61",
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9.05",
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12.57",
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3.01",
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2.89",
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3.14",
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4.15",
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3.00",
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0.00-11.97-12.86",
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0.00-14.48-16.07",
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0.07",
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1.77",
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7.64",
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2.48",
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6.50",
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2.21",
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2.89",
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0.55",
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0.00-26.86-12.66",
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0.00-18.00-14.84",
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0.00-10.27-14.51",
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0.00-25.36-18.19",
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0.00-13.50-11.10",
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0.00-17.20-13.59",
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0.00-25.30-10.01",
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0.00-29.68-22.25",
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0.00-21.51-15.96",
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0.00-19.34-13.69",
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0.00-17.06-10.01",
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1.33",
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0.00-18.90-13.27",
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1.52",
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0.56",
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0.00-26.05-24.33",
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0.00-17.76-18.19",
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-5.31",
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0.00-22.00-10.47",
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0.00-18.89-10.80",
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0.00-18.63-10.80",
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0.00-23.41-11.62",
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0.00-22.14-16.68",
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0.00-24.11-19.04",
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0.00-22.39-15.25",
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1.53-17.16-11.58",
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>"1971 1 8GG89 0.00-14.45-10.75", "1971 1 8GG90 0.00-15.19
-6.89",
>"1971 1 8GG91 0.00-15.81 -5.03", "1971 1 8GG92 0.00-14.26
-7.98",
>"1971 1 8GG93 0.00-13.90-11.03", "1971 1 8GG94 0.00-20.99
-9.83",
>"1971 1 8GG95 0.00-14.62-12.60", "1971 1 8GG96
0.00-24.63-11.72",
>"1971 1 8GG97 0.00-11.73-10.12", "1971 1 8GG98
0.00-18.30-13.60",
>"1971 1 8GG99 0.00-16.03-13.33", "1971 1 8G100
0.00-21.05-11.34",
>"1971 1 8G101 0.00-16.64-11.46", "1971 1 8G102
0.00-11.64-13.22",
>"1971 1 8G103 0.00-16.60-12.60", "1971 1 8G104 0.00-20.00
-7.75",
>"1971 1 8G105 0.00-15.10-10.28", "1971 1 8G106
0.00-19.21-11.95",
>"1971 1 8G107 0.00-15.91 -7.70", "1971 1 8G108
0.00-15.05-13.87",
>"1971 1 8G109 0.00-13.18 -9.58", "1971 1 8G110
0.00-17.82-11.81",
>"1971 1 8G111 0.00-11.29 -8.49", "1971 1 8G112
0.00-13.39-10.49",
>"1971 1 8G113 0.00-15.25 -9.80", "1971 1 8G114
0.10-24.97-13.28",
>"1971 1 8G115 0.00-17.06 -8.99", "1971 1 8G116
0.00-34.06-20.00",
>"1971 1 8G117 0.00-29.92-17.96", "1971 1 8G118
0.00-27.16-14.45",
>"1971 1 8G119 0.00-24.79-19.11", "1971 1 8G120
0.15-24.52-17.37",
>"1971 1 9GGG1 0.00-20.49-13.47", "1971 1 9GGG2
0.00-17.73-10.87",
>"1971 1 9GGG3 0.00-18.44-16.84", "1971 1 9GGG4
0.00-18.16-14.79",
>"1971 1 9GGG5 0.00-24.01-15.93", "1971 1 9GGG6
0.00-18.21-12.37",
>"1971 1 9GGG7 0.00-17.94-19.30", "1971 1 9GGG8
0.00-18.51-14.07",
>"1971 1 9GGG9 0.00-13.71-17.01", "1971 1 9GG10
0.10-15.29-15.46",
>"1971 1 9GG11 0.00-18.69-15.79", "1971 1 9GG12
0.00-14.34-17.41",
>"1971 1 9GG13 0.00-13.55-17.04", "1971 1 9GG14
0.00-22.77-15.57",
>"1971 1 9GG15 0.00-13.70-18.17", "1971 1 9GG16
0.00-13.00-11.75",
>"1971 1 9GG17 0.00-18.82-11.74", "1971 1 9GG18
0.00-14.45-16.14",
>"1971 1 9GG19 0.00 -9.43-16.56", "1971 1 9GG20
0.00-22.20-12.81",
>"1971 1 9GG21 0.00-17.16-10.77", "1971 1 9GG22
0.00-18.45-12.22",
>"1971 1 9GG23 0.00-11.15-17.75", "1971 1 9GG24 0.00-18.59
-8.48",
>"1971 1 9GG25 0.00-23.86-16.04", "1971 1 9GG26
0.00-16.40-12.21",
>"1971 1 9GG27 0.00-19.89-13.52", "1971 1 9GG28
0.24-12.90-13.83",
>"1971 1 9GG29 0.00-22.99-16.61", "1971 1 9GG30 0.00-14.12
-9.60",
>"1971 1 9GG31 0.00-22.84-16.52", "1971 1 9GG32
0.00-17.42-11.11",
>"1971 1 9GG33 0.00-18.01-15.11", "1971 1 9GG34
0.00-14.37-15.03",
>"1971 1 9GG35 0.00-15.25-19.38", "1971 1 9GG36 0.00-12.19
-9.92",
>"1971 1 9GG37 0.00-19.20-17.27", "1971 1 9GG38
0.00-32.65-12.48",
>"1971 1 9GG39 0.00-24.11-16.09", "1971 1 9GG40
0.00-23.44-22.70"
>))
>
>
>
>Here is a code for processing a thousand of these kind of files:
>#==================================================================================================================>lst1Sub
<- data_above
>
>lst2 <- lapply(lst1Sub,function(x) {dateSite <-
>gsub("(.*G.{3}).*","\\1",x);
>? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? dat1 <-
>data.frame(Year=as.numeric(substr(dateSite,1,4)),
>Month=as.numeric(substr(dateSite,5,6)),Day=as.numeric(substr(dateSite,7,8)),Site=substr(dateSite,9,12),stringsAsFactors=FALSE);
>
>? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Sims <-
>str_trim(gsub(".*G.{3}\\s?(.*)","\\1",x));Sims[grep("\\d+-",Sims)]
<-
>gsub("(.*)([- ][0-9]+\\.[0-9]+)","\\1
>\\2",gsub("^([0-9]+\\.[0-9]+)(.*)","\\1 \\2",
>Sims[grep("\\d+-",Sims)]));
>? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Sims1 <-
>read.table(text=Sims,header=FALSE); names(Sims1) <-
c("Precipitation",
>"Tmin", "Tmax");dat2 <- cbind(dat1,Sims1)})
>#========================================================================================================================>
>1) Please use this code to free up memory considering that I am working
>on 1000 files, so I am in for speed.
>2) Is there a faster way of doing the same task as above? My data files
>are simulated in FORTRAN and read as:
>
>data.frame(Day=as.numeric(substr(rain.data,7,8)),
>? ? ? ? ? ? ? ? ? ? ? ? ?Month=as.numeric(substr(rain.data,5,6)),
>? ? ? ? ? ? ? ? ? ? ? ? ?Year=as.numeric(substr(rain.data,1,4)),
>? ? ? ? ? ? ? ? ? ? ? ? ?Site=substr(rain.data,9,12),
>? ? ? ? ? ? ? ? ? ? ? ? Precip=as.numeric(substr(rain.data,13,18)),
>? ? ? ? ? ? ? ? ? ? ? ? Tmin=as.numeric(substr(rain.data,19,24)),
>? ? ? ? ? ? ? ? ? ? ? ? Tmax=as.numeric(substr(rain.data,25,30)))
>#### Day occupies position 7 and 8, Month occupies position 5 and 6,
>Year occupies position 1 to 4 and so on for site, precip, ####tmin and
>tmax
>
>Thanks for your great help.
>Zilefac.
>
>______________________________________________
>R-help at r-project.org mailing list
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.