Please don't cross-post per R-help posting guide.
The "data" function is not itself data. Provide your data to the
function using the name you assign to it according to the
getVarianceStabilizedData function documentation.
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Suparna Mitra <suparna.mitra.sm at gmail.com>
wrote:> Hi All,
>I am having a problem while running getVarianceStabilizedData in DDSeq2
>package.
>
>data.vsd<-getVarianceStabilizedData(data)
>Error in (function (classes, fdef, mtable) :
>unable to find an inherited method for function ?dispersionFunction?
>for
>signature ?"CountDataSet"?
>
>Though the function looks okay
>> dispersionFunction
>standardGeneric for "dispersionFunction" defined from package
"DESeq2"
>
>function (object)
>standardGeneric("dispersionFunction")
><environment: 0x7fe7a9c5d140>
>Methods may be defined for arguments: object
>Use showMethods("dispersionFunction") for currently available
ones.
>
>Can anybody please help?
>Thanks,
>Mitra.
>
> [[alternative HTML version deleted]]
>
>
>
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