Claus.Neumayer at merckgroup.com
2014-Jan-23 09:22 UTC
[R] R-3.0.2 installation breaks up with error
Dear all, I tried to install R-3.0.2 Source on a SUSE SLES11 Version and after the ./configure the make command breaks up with error: gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I../../src/extra/xz/api -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Rmain.c -o Rmain.o gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -L/usr/local/lib64 -o R.bin Rmain.o -L../../lib -lR -lRblas ../../lib/libRblas.so: undefined reference to `z_abs' collect2: ld returned 1 exit status make[3]: *** [R.bin] Error 1 How can I solve this issue. I would be really happy for an hint. Thanks a lot Mit freundlichen Grüßen / Best regards Claus Neumayer IS-PDR-A Research D41/221 HPC: D041/001 Phone: +49(0)6151 724526 Mobil: +49 15114544526 Fax: +49(0)6151 914526 Email: Claus.Neumayer@merck.de Merck KGaA Frankfurter Str. 250 D 64293 Darmstadt Home: www.merck.de Pflichtangaben finden Sie unter http://mandatories.merck.de Mandatory Information can be found at http://mandatories.merck.de This message and any attachment are confidential and may be privileged or otherwise protected from disclosure. If you are not the intended recipient, you must not copy this message or attachment or disclose the contents to any other person. If you have received this transmission in error, please notify the sender immediately and delete the message and any attachment from your system. Merck KGaA, Darmstadt, Germany and any of its subsidiaries do not accept liability for any omissions or errors in this message which may arise as a result of E-Mail-transmission or for damages resulting from any unauthorized changes of the content of this message and any attachment thereto. Merck KGaA, Darmstadt, Germany and any of its subsidiaries do not guarantee that this message is free of viruses and does not accept liability for any damages caused by any virus transmitted therewith. Click http://www.merckgroup.com/disclaimer to access the German, French, Spanish and Portuguese versions of this disclaimer. [[alternative HTML version deleted]]
That is not a question for R-help (see the posting guide), not a default build of R (and you show nothing about how you did this) and so not reproducible. z_abs looks like a Fortran symbol, so my guess is that libRblas was not linked correctly. On a Linux system it should be dynamically linked to libgfortran. On 23/01/2014 09:22, Claus.Neumayer at merckgroup.com wrote:> Dear all, > > I tried to install R-3.0.2 Source on a SUSE SLES11 Version and after the > ./configure the make command breaks up with > error: > gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 > -I../../src/extra/pcre -I../../src/extra -I../../src/extra/xz/api -I. > -I../../src/include -I../../src/include -I/usr/local/include > -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Rmain.c -o Rmain.o > gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -L/usr/local/lib64 -o R.bin > Rmain.o -L../../lib -lR -lRblas > ../../lib/libRblas.so: undefined reference to `z_abs' > collect2: ld returned 1 exit status > make[3]: *** [R.bin] Error 1 > > How can I solve this issue. > I would be really happy for an hint. Thanks a lot > > > Mit freundlichen Gr??en / Best regards > > Claus Neumayer > > IS-PDR-A Research > D41/221 > HPC: D041/001 > Phone: +49(0)6151 724526 > Mobil: +49 15114544526 > Fax: +49(0)6151 914526 > Email: Claus.Neumayer at merck.de > > Merck KGaA > Frankfurter Str. 250 > D 64293 Darmstadt > Home: www.merck.de > > Pflichtangaben finden Sie unter http://mandatories.merck.de > Mandatory Information can be found at http://mandatories.merck.de > > This message and any attachment are confidential and may be privileged or otherwise protected from disclosure. If you are not the intended recipient, you must not copy this message or attachment or disclose the contents to any other person. If you have received this transmission in error, please notify the sender immediately and delete the message and any attachment from your system. Merck KGaA, Darmstadt, Germany and any of its subsidiaries do not accept liability for any omissions or errors in this message which may arise as a result of E-Mail-transmission or for damages resulting from any unauthorized changes of the content of this message and any attachment thereto. Merck KGaA, Darmstadt, Germany and any of its subsidiaries do not guarantee that this message is free of viruses and does not accept liability for any damages caused by any virus transmitted therewith. > > Click http://www.merckgroup.com/disclaimer to access the German, French, Spanish and Portuguese versions of this disclaimer. > > [[alternative HTML version deleted]] > > > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595