Tim Richter-Heitmann
2014-Jan-15 13:14 UTC
[R] set new path for package installation, because In normalizePath(path.expand(path), winslash, mustWork) :
Hi there, i am no way an expert user, so please bear with me, as i am basically looking for a step.by.step tutorial to change pathes in R. This is my current problem: We are running R 3.0.2 with R-Studio on a Win7 environment. In our case, the default working directory Users/Documents/R on the local drive is not available. Instead, the path is redirected to a different network drive (as all our profile data is stored on that H: drive). This used to work fine at some point, but the other day, some major changes were made to our server (which i have nothing to do with), and suddenly, a few users having this problem: Whenever i am starting R, i am welcomed with: "Warning message: In normalizePath(path.expand(path), winslash, mustWork) : path[1]="//x/home$/tim/Documents/R/win-library/3.0": Access is denied" And i am not allowed to install packages or manipulate objects in my workspace. However, whenever i am running R with admin rights, i may install packages, but they will be stored in a directory in profiles/admin/appdata/local. Curiously, when i perform .libPaths(), i get: [1] "\\\\x/home$/tim/Documents/R/win-library/3.0" [2] "C:/Program Files/R/R-3.0.2/library" I can use the packages then with the normal user account though. Still, i am not able to write into my workspace with normal user rights, and for us, it is impossible to grant every user with admin rights to run R-Studio. From what i have found on google, there are workarounds for R, like starting R from batch files, but i do not know if they're fine when i want to start R from an GUI like R-Studio, too. I also have found advice to change the path to the working and library location directory in the Rprofile. I do find a rprofile.site in ../etc , but there is no path given to the rprofile, which i think is needed. There was another tip to manipulate R_LIBS_USER. But, tbh, there is a limit to my technical skill. Do you have any idea to fix that issue? Or is anyone please willing to give me a little guidance? Thank you very much! -- Tim Richter-Heitmann (M.Sc.) PhD Candidate International Max-Planck Research School for Marine Microbiology University of Bremen Microbial Ecophysiology Group (AG Friedrich) FB02 - Biologie/Chemie Leobener Stra?e (NW2 A2130) D-28359 Bremen Tel.: 0049(0)421 218-63062 Fax: 0049(0)421 218-63069