Morway, Eric
2013-Dec-23 18:11 UTC
[R] Inserting color into an irregular grid comprised of polygons
useRs, The example code below is an attempt to plot some spatial data that is associated with an irregularly spaced grid. The last thing I hope to do with this example is assign the color of each polygon generated in the nested for loop based on the value contained in "vals". The R code I'm seeking help with appears at the end of the example code below. How would one assign a color to the polygon at position [j,k] that is appropriately scaled to the total range of "vals"? The comment appearing before the last line of commented-out code in the example below provides a little more information. Thanks, Eric ## Example R Code library(gsubfn) #uses paste0 func x.space <- c(0.13833334,0.27666667,0.27666667,0.27666667,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.27666667,0.27666667,0.27666667,0.27666667,0.27666667,0.27666667,0.27666667,0.415,0.415,0.415,0.415,0.415,0.415,0.415, 0.27666667, 0.27666667) z.space <- c(0.23503518,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.050285053,0.04901495,0.0993,0.042104937,0.057195064,0.059790898,0.0395091,0.03392482,0.022215653,0.043159526,0.048876755,0.050423246,0.049547195,0.049752805,0.050217632,0.049082365,0.0993,0.046798017,0.052501984,0.052228954,0.047071047,0.052899394,0.046400607,0.06309083,0.036209174,0.0993,0.050150216,0.04914978,0.055581152,0.043718845,0.0993,0.0993,0.0993,0.0993,0.0993,0.1986,0.1986,0.1986,0.1986,0.1986,0.3972,0.3972,0.3972,0.4965,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.4965,0.4333665,0.44272622,0.5141073,0.5958,0.4965,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.1986,0.1986) x.range <- c(0,sum(x.space)) z.range <- c(0,sum(z.space)) z.sum <- sum(z.space) vals <- matrix(c(0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.684E+01, 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0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01,0.649E+01), nrow = length(z.space), ncol = length(x.space), byrow TRUE, dimnames = list(paste0("R",seq(1,length(z.space),by=1)), paste0("C",seq(1,length(x.space),by=1)))) plot(1,1, col="white" ,xlim=x.range, ylim=z.range, xaxs="i", yaxs="i", las=1, xlab="X", ylab="Z") for (k in (1:length(z.space))){ for (j in (1:length(x.space))){ if (j==1){ x = c(0, 0, x.space[j], x.space[j]) } else { x = c(sum(x.space[1:(j-1)]), sum(x.space[1:(j-1)]), sum(x.space[1:j]), sum(x.space[1:j])) } if (k==1){ y = c(z.sum, z.sum - sum(z.space[1]), z.sum - sum(z.space[1]), z.sum) } else { y = c(z.sum - sum(z.space[1:(k-1)]), z.sum - sum(z.space[1:k]), z.sum - sum(z.space[1:k]), z.sum - sum(z.space[1:(k-1)])) } #This shows the grid cells polygon(x=x, y=y, border="black") #Instead of plotting the grid cell boundaries, I'd like to plot a colored polygon that is borderless #Need help assigning a color that is within the total range of "vals" and is based on vals[j,k] #polygon(x=x, y=y, border=NULL, col= vals[j,k]) } } [[alternative HTML version deleted]]
David Carlson
2013-Dec-23 19:05 UTC
[R] Inserting color into an irregular grid comprised of polygons
Recode val into a set of integers equal to the number of color levels you want and then use heat.colors(), terrain.colors(), or a similar function to define a vector of continuous colors. # cut makes it easy to split up the data but it creates a factor # and loses the matrix dimensions so we have to convert back. cv <- matrix(as.integer(cut(vals, breaks=10)), dim(vals)) pal <- heat.colors(10) Then use polygon(x=x, y=y, border=NA, col=pal[cv[k, j]]) Note: border=NA, not NULL David Carlson -----Original Message----- From: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org] On Behalf Of Morway, Eric Sent: Monday, December 23, 2013 12:11 PM To: R mailing list Subject: [R] Inserting color into an irregular grid comprised of polygons useRs, The example code below is an attempt to plot some spatial data that is associated with an irregularly spaced grid. The last thing I hope to do with this example is assign the color of each polygon generated in the nested for loop based on the value contained in "vals". The R code I'm seeking help with appears at the end of the example code below. How would one assign a color to the polygon at position [j,k] that is appropriately scaled to the total range of "vals"? The comment appearing before the last line of commented-out code in the example below provides a little more information. Thanks, Eric ## Example R Code library(gsubfn) #uses paste0 func x.space <- c(0.13833334,0.27666667,0.27666667,0.27666667,0.13833334,0.13833 334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.138 33334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.1 3833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0 .13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334 ,0.13833334,0.13833334,0.13833334,0.13833334,0.13833334,0.138333 34,0.13833334,0.27666667,0.27666667,0.27666667,0.27666667,0.2766 6667,0.27666667,0.27666667,0.415,0.415,0.415,0.415,0.415,0.415,0 .415, 0.27666667, 0.27666667) z.space <- c(0.23503518,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.0993,0. 0993,0.0993,0.0993,0.0993,0.0993,0.0993,0.050285053,0.04901495,0 .0993,0.042104937,0.057195064,0.059790898,0.0395091,0.03392482,0 .022215653,0.043159526,0.048876755,0.050423246,0.049547195,0.049 752805,0.050217632,0.049082365,0.0993,0.046798017,0.052501984,0. 052228954,0.047071047,0.052899394,0.046400607,0.06309083,0.03620 9174,0.0993,0.050150216,0.04914978,0.055581152,0.043718845,0.099 3,0.0993,0.0993,0.0993,0.0993,0.1986,0.1986,0.1986,0.1986,0.1986 ,0.3972,0.3972,0.3972,0.4965,0.3972,0.3972,0.3972,0.3972,0.3972, 0.3972,0.3972,0.3972,0.4965,0.4333665,0.44272622,0.5141073,0.595 8,0.4965,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972 ,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972,0.3972, 0.3972,0.1986,0.1986) x.range <- c(0,sum(x.space)) z.range <- c(0,sum(z.space)) z.sum <- sum(z.space) vals <- matrix(c(0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000 E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00 ,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.0 00E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+ 00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0 .000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000 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000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E +00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00, 0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.00 0E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+0 0,0.000E+00,0.000E+00,0.632E+01,0.656E+01,0.680E+01,0.684E+01,0. 684E+01, 0.669E+01,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.00 0E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+0 0,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0. 000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E +00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00, 0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.00 0E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+0 0,0.000E+00,0.000E+00,0.583E+01,0.658E+01,0.681E+01,0.684E+01,0. 684E+01, 0.657E+01,0.637E+01,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.00 0E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+0 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8E+01,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+0 0,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0. 000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E +00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00, 0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.00 0E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+0 0,0.133E+00,0.758E+01,0.682E+01,0.721E+01,0.724E+01,0.724E+01,0. 724E+01, 0.683E+01,0.702E+01,0.665E+01,0.629E+01,0.634E+01,0.606E+01,0.34 7E+01,0.575E+00,0.776E-01,0.669E-02,0.844E-02,0.000E+00,0.000E+0 0,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0. 000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E +00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00, 0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.00 0E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+00,0.000E+0 0,0.352E+00,0.789E+01,0.834E+01,0.723E+01,0.705E+01,0.703E+01,0. 703E+01, 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(1:length(z.space))){ for (j in (1:length(x.space))){ if (j==1){ x = c(0, 0, x.space[j], x.space[j]) } else { x = c(sum(x.space[1:(j-1)]), sum(x.space[1:(j-1)]), sum(x.space[1:j]), sum(x.space[1:j])) } if (k==1){ y = c(z.sum, z.sum - sum(z.space[1]), z.sum - sum(z.space[1]), z.sum) } else { y = c(z.sum - sum(z.space[1:(k-1)]), z.sum - sum(z.space[1:k]), z.sum - sum(z.space[1:k]), z.sum - sum(z.space[1:(k-1)])) } #This shows the grid cells polygon(x=x, y=y, border="black") #Instead of plotting the grid cell boundaries, I'd like to plot a colored polygon that is borderless #Need help assigning a color that is within the total range of "vals" and is based on vals[j,k] #polygon(x=x, y=y, border=NULL, col= vals[j,k]) } } [[alternative HTML version deleted]] ______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, 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