R help - Dec 2013 - Gene Ontology Profiling on Single Data Set with Different Species?

Hey everyone,

I have a list of genes for which I would like to get Gene Ontology profiles
(i.e. what are the most common GO terms). First I had a look at topGO, but since
that compares two data sets, which I don?t have, it wasn?t right for this
purpose. I then found goProfiles, which seems to do exactly what I wanted, but
there is one problem: the genes I have don?t all come from the same organism, so
there?s no organism annotation package.
Do you know of any other R package that would do the trick if I give it my list
of genes and their GO terms? Or do I have to create my own annotation package
and then use goProfiles?

Regards,
Sarah

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Sarah Pohl
PhD student

Helmholtz Centre for Infection Research

eMail: sarah.pohl at helmholtz-hzi.de


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