On 13/08/2013 18:47, Jannis wrote:> Dear r users,
>
>
> what could cause such an error:
>
> "internal error -3 in R_decompress1"
>
>
> unfortunately the error kills all my usual error catching mechanisms an
> appears on a remote cluster so I can not really tell you which command
> etc is causing it.
It is a corrupt package installation, so re-install.
>
>
> Thanks for any hints on where to dig for the solution (or even the just
> cause).
>
> Jannis
>
>
>
> R version 3.0.0 (2013-04-03)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=C LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] parallel stats graphics grDevices datasets utils methods
> [8] base
>
> other attached packages:
> [1] snowfall_1.84-4 snow_0.3-12
> [3] DistributionUtils_0.5-1 RUnit_0.4.26
> [5] RColorBrewer_1.0-5 plotrix_3.5
> [7] doMC_1.3.0 iterators_1.0.6
> [9] multicore_0.1-7 plyr_1.8
> [11] raster_2.1-49 sp_1.0-11
> [13] abind_1.4-0 foreach_1.4.1
> [15] RNetCDF_1.6.1-2 Rssa_0.9.10
> [17] forecast_4.06 svd_0.3.2-1
>
> loaded via a namespace (and not attached):
> [1] codetools_0.2-8 colorspace_1.2-2 compiler_3.0.0 fracdiff_1.4-2
> [5] grid_3.0.0 lattice_0.20-15 nnet_7.3-7 quadprog_1.5-5
> [9] tools_3.0.0 tseries_0.10-32 zoo_1.7-10
>
> ______________________________________________
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> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595