R help - Aug 2013 - Rmpi installs before R-3.0.0 but not since

With R-3.0.1

Loading required package: Rmpi
Failed with error:  ?package ?Rmpi? was built before R 3.0.0: please re-install
it?


And when I try to reinstall Rmpi, I get this

<after a whole bunch of 'yes's>
....
checking mpi.h usability... no
checking mpi.h presence... no
checking for mpi.h... no
configure: error: "Cannot find mpi.h header file"
ERROR: configuration failed for package ?Rmpi?


And attempting to go back....

With R-2.15.3, I get these warnings:

Warning messages:
1: package ?gbm? was built under R version 3.0.1 
2: package ?survival? was built under R version 3.0.1 
[1] "Error in socketConnection(\"localhost\", port = port, server
= TRUE, blocking = TRUE,  : \n  cannot open the connection\n"

So there's no going back.  

Where do I look for reasons why Rmpi can't find mpi.h header even
though it was findable before 3.0.1?  I know not to take that message
too literally since there is a file mpi.h that bash can find.
Something else is being hinted at but what?


> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_NZ.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_NZ.UTF-8        LC_COLLATE=en_NZ.UTF-8    
 [5] LC_MONETARY=en_NZ.UTF-8    LC_MESSAGES=en_NZ.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] parallel  splines   grDevices utils     stats     graphics  methods  
[8] base     

other attached packages:
[1] gbm_2.1          survival_2.37-4  cairoDevice_2.19 lattice_0.20-15 

loaded via a namespace (and not attached):
[1] grid_3.0.1      multicore_0.1-7
> 

TIA

-- 
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.   
   ___    Patrick Connolly   
 {~._.~}                   Great minds discuss ideas    
 _( Y )_  	         Average minds discuss events 
(:_~*~_:)                  Small minds discuss people  
 (_)-(_)  	                      ..... Eleanor Roosevelt
	  
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.

Hello,

Maybe this link might help:
http://www.stats.uwo.ca/faculty/yu/Rmpi/install.htm

Regards,
Pascal



2013/8/13 Patrick Connolly <p_connolly@slingshot.co.nz>
>
> With R-3.0.1
>
> Loading required package: Rmpi
> Failed with error:  ‘package ‘Rmpi’ was built before R 3.0.0: please
> re-install it’
>
>
> And when I try to reinstall Rmpi, I get this
>
> <after a whole bunch of 'yes's>
> ....
> checking mpi.h usability... no
> checking mpi.h presence... no
> checking for mpi.h... no
> configure: error: "Cannot find mpi.h header file"
> ERROR: configuration failed for package ‘Rmpi’
>
>
> And attempting to go back....
>
> With R-2.15.3, I get these warnings:
>
> Warning messages:
> 1: package ‘gbm’ was built under R version 3.0.1
> 2: package ‘survival’ was built under R version 3.0.1
> [1] "Error in socketConnection(\"localhost\", port = port,
server = TRUE,
> blocking = TRUE,  : \n  cannot open the connection\n"
>
> So there's no going back.
>
> Where do I look for reasons why Rmpi can't find mpi.h header even
> though it was findable before 3.0.1?  I know not to take that message
> too literally since there is a file mpi.h that bash can find.
> Something else is being hinted at but what?
>
>
>
> > sessionInfo()
> R version 3.0.1 (2013-05-16)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_NZ.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_NZ.UTF-8        LC_COLLATE=en_NZ.UTF-8
>  [5] LC_MONETARY=en_NZ.UTF-8    LC_MESSAGES=en_NZ.UTF-8
>  [7] LC_PAPER=C                 LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] parallel  splines   grDevices utils     stats     graphics  methods
> [8] base
>
> other attached packages:
> [1] gbm_2.1          survival_2.37-4  cairoDevice_2.19 lattice_0.20-15
>
> loaded via a namespace (and not attached):
> [1] grid_3.0.1      multicore_0.1-7
> >
>
>
> TIA
>
> --
> ~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
>    ___    Patrick Connolly
>  {~._.~}                   Great minds discuss ideas
>  _( Y )_                 Average minds discuss events
> (:_~*~_:)                  Small minds discuss people
>  (_)-(_)                              ..... Eleanor Roosevelt
>
> ~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
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