monaR
2013-Jul-31 10:45 UTC
[R] detect multivariate outliers with aq.plot {mvoutliers} high dimensions
Hei, i have a species abundance data set CommData, with n (samples)=40 and p (species)=107. Sample Species A Species B Species C Species D ?. 411_2010 40 20 0 0 412_2010 30 20 0 0 413_2010 0 0 0 0 414_2010 0 10 0 0 415_2010 20 0 0 0 418_2010 0 0 0 0 419_2010 0 0 0 0 421_2010 160 40 0 10 ?. I try to find outliers based on the Mahalonis distance with the package {mvoutliers}. I get an error using >aq.plot(CommData): "Error in covMcd(x, alpha = quan) : n <= p -- you can't be serious!" SoI try >pcout(CommData), which is supposed to work for high dimensions, but get the error "More than 50% equal values in one or more variables!" Can this be fixed? Any idea how i can find outliers in my multidimensional data? Thanks a lot for any help!! -- View this message in context: http://r.789695.n4.nabble.com/detect-multivariate-outliers-with-aq-plot-mvoutliers-high-dimensions-tp4672714.html Sent from the R help mailing list archive at Nabble.com.
monaR
2013-Aug-26 13:57 UTC
[R] detect multivariate outliers with aq.plot {mvoutliers} high dimensions
OK, thanks:) Maybe for my purpose a visible evaluation is also fine. But in general I imagine it to happen quite often that in ecological data, people have e.g. more species than sites. -- View this message in context: http://r.789695.n4.nabble.com/detect-multivariate-outliers-with-aq-plot-mvoutliers-high-dimensions-tp4672714p4674555.html Sent from the R help mailing list archive at Nabble.com.