I am trying to install the package boss but i am getting error below:
Please advice
install.packages("boss")
--- Please select a CRAN mirror for use in this session ---
CRAN mirror
1: 0-Cloud 2: Argentina (La Plata)
3: Argentina (Mendoza) 4: Australia (Canberra)
5: Australia (Melbourne) 6: Austria
7: Belgium 8: Brazil (PR)
9: Brazil (RJ) 10: Brazil (SP 1)
11: Brazil (SP 2) 12: Canada (BC)
13: Canada (NS) 14: Canada (ON)
15: Canada (QC 1) 16: Canada (QC 2)
17: Chile 18: China (Beijing 1)
19: China (Beijing 2) 20: China (Guangzhou)
21: China (Hefei) 22: China (Xiamen)
23: Colombia (Bogota) 24: Colombia (Cali)
25: Denmark 26: Ecuador
27: France (Lyon 1) 28: France (Lyon 2)
29: France (Montpellier) 30: France (Paris 1)
31: France (Paris 2) 32: Germany (Berlin)
33: Germany (Bonn) 34: Germany (Falkenstein)
35: Germany (Goettingen) 36: Greece
37: Hungary 38: India
39: Indonesia 40: Iran
41: Ireland 42: Italy (Milano)
43: Italy (Padua) 44: Italy (Palermo)
45: Japan (Hyogo) 46: Japan (Tsukuba)
47: Japan (Tokyo) 48: Korea (Seoul 1)
49: Korea (Seoul 2) 50: Latvia
51: Mexico (Mexico City) 52: Mexico (Texcoco)
53: Netherlands (Amsterdam) 54: Netherlands (Utrecht)
55: New Zealand 56: Norway
57: Philippines 58: Poland
59: Portugal 60: Russia
61: Singapore 62: Slovakia
63: South Africa (Cape Town) 64: South Africa (Johannesburg)
65: Spain (Madrid) 66: Sweden
67: Switzerland 68: Taiwan (Taichung)
69: Taiwan (Taipei) 70: Thailand
71: Turkey 72: UK (Bristol)
73: UK (London) 74: UK (St Andrews)
75: USA (CA 1) 76: USA (CA 2)
77: USA (IA) 78: USA (IN)
79: USA (KS) 80: USA (MD)
81: USA (MI) 82: USA (MO)
83: USA (OH) 84: USA (OR)
85: USA (PA 1) 86: USA (PA 2)
87: USA (TN) 88: USA (TX 1)
89: USA (WA 1) 90: USA (WA 2)
91: Venezuela 92: Vietnam
Selection: 86
also installing the dependency 'ncdf'
trying URL
'http://cran.mirrors.hoobly.com/src/contrib/ncdf_1.6.6.tar.gz'
Content type 'application/x-gzip' length 79403 bytes (77 Kb)
opened URL
=================================================
downloaded 77 Kb
trying URL 'http://cran.mirrors.hoobly.com/src/contrib/boss_1.2.tar.gz'
Content type 'application/x-gzip' length 9702 bytes
opened URL
=================================================
downloaded 9702 bytes
* installing *source* package 'ncdf' ...
** package 'ncdf' successfully unpacked and MD5 sums checked
checking for nc-config... no
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking netcdf.h usability... no
checking netcdf.h presence... no
checking for netcdf.h... no
configure: error: netcdf header netcdf.h not found
ERROR: configuration failed for package 'ncdf'
* removing '/share/apps/R-2.15.3/lib64/R/library/ncdf'
ERROR: dependency 'ncdf' is not available for package 'boss'
* removing '/share/apps/R-2.15.3/lib64/R/library/boss'
The downloaded source packages are in
'/tmp/RtmppOWF74/downloaded_packages'
Updating HTML index of packages in '.Library'
Making packages.html ... done
Warning messages:
1: In install.packages("boss") :
installation of package 'ncdf' had non-zero exit status
2: In install.packages("boss") :
installation of package 'boss' had non-zero exit status
>
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On 04/25/2013 11:42 PM, Pramod Anugu wrote:> I am trying to install the package boss but i am getting error below: > Please advice > > ... > checking netcdf.h usability... no > > checking netcdf.h presence... no > > checking for netcdf.h... no > > configure: error: netcdf header netcdf.h not found > > ERROR: configuration failed for package 'ncdf' > ...Hi Pramod, I would suggest installing the netcdf packages: yum install netcdf or use whatever package management system you prefer. Jim