Hm.. seems like its a problem with loading it in the profile..
If i load it again in the console it works fine. Must have something to do with
the masking.
----------
Changed load-order with the package which required "stats" that did
the masking, and it works now, so, nevermind.
On 31.07.2012, at 16:25, Jessica Streicher wrote:
> Hi!
>
> The kernlab function kpca() mentions that new observations can be
transformed by using predict. Theres also an example in the documentation, but
as you can see i am getting an error there (As i do with my own data). I'm
not sure whats wrong at the moment. I haven't any predict functions written
by myself in the workspace either. I've tested it with using the matrix
version and the dataframe/formula version on kpca.
>
> data(iris)
> test <- sample(1:150,20)
> kpc <-
kpca(~.,data=iris[-test,-5],kernel="rbfdot",kpar=list(sigma=0.2),features=2)
> emb <- predict(kpc,iris[test,-5])
> Error in UseMethod("predict") :
> no applicable method for 'predict' applied to an object of class
"c('kpca', 'prc')"
>
> str(kpc)
> Formal class 'kpca' [package "kernlab"] with 9 slots
> ..@ rotated : num [1:130, 1:2] -9.43 -9.17 -9.09 -9.43 -8.53 ...
> .. ..- attr(*, "dimnames")=List of 2
> .. .. ..$ : chr [1:130] "1" "2" "4"
"5" ...
> .. .. ..$ : NULL
> ..@ pcv : num [1:130, 1:2] -0.224 -0.218 -0.216 -0.225 -0.203 ...
> ..@ eig : Named num [1:2] 0.323 0.119
> .. ..- attr(*, "names")= chr [1:2] "Comp.1"
"Comp.2"
> ..@ kernelf :Formal class 'rbfkernel' [package
"kernlab"] with 2 slots
> .. .. ..@ .Data:function (x, y = NULL)
> .. .. ..@ kpar :List of 1
> .. .. .. ..$ sigma: num 0.2
> ..@ kpar : list()
> ..@ xmatrix : num [1:130, 1:4] 5.1 4.9 4.6 5 5.4 4.6 5 4.4 4.9 4.8 ...
> .. ..- attr(*, "dimnames")=List of 2
> .. .. ..$ : chr [1:130] "1" "2" "4"
"5" ...
> .. .. ..$ : chr [1:4] "Sepal.Length" "Sepal.Width"
"Petal.Length" "Petal.Width"
> .. ..- attr(*, "assign")= int [1:4] 1 2 3 4
> ..@ kcall : language kpca(x = x, data = ..1, kernel =
"rbfdot", kpar = ..3, features = 2)
> ..@ terms :Classes 'terms', 'formula' length 2
~Sepal.Length + Sepal.Width + Petal.Length + Petal.Width
> .. .. ..- attr(*, "variables")= language list(Sepal.Length,
Sepal.Width, Petal.Length, Petal.Width)
> .. .. ..- attr(*, "factors")= int [1:4, 1:4] 1 0 0 0 0 1 0 0 0 0
...
> .. .. .. ..- attr(*, "dimnames")=List of 2
> .. .. .. .. ..$ : chr [1:4] "Sepal.Length"
"Sepal.Width" "Petal.Length" "Petal.Width"
> .. .. .. .. ..$ : chr [1:4] "Sepal.Length"
"Sepal.Width" "Petal.Length" "Petal.Width"
> .. .. ..- attr(*, "term.labels")= chr [1:4]
"Sepal.Length" "Sepal.Width" "Petal.Length"
"Petal.Width"
> .. .. ..- attr(*, "order")= int [1:4] 1 1 1 1
> .. .. ..- attr(*, "intercept")= num 0
> .. .. ..- attr(*, "response")= int 0
> .. .. ..- attr(*, ".Environment")=<environment:
R_GlobalEnv>
> .. .. ..- attr(*, "predvars")= language list(Sepal.Length,
Sepal.Width, Petal.Length, Petal.Width)
> .. .. ..- attr(*, "dataClasses")= Named chr [1:4]
"numeric" "numeric" "numeric" "numeric"
> .. .. .. ..- attr(*, "names")= chr [1:4]
"Sepal.Length" "Sepal.Width" "Petal.Length"
"Petal.Width"
> ..@ n.action: NULL
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>
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