Hi friends,
I was trying to install RJSONIO in Ubuntu10.04 LTS but unfortunately ends
up with following error.
trying URL 'stat.ethz.ch/CRAN/src/contrib/RJSONIO_0.98-1.tar.gz'
Content type 'application/x-gzip' length 1150673 bytes (1.1 Mb)
opened URL
=================================================downloaded 1.1 Mb
* installing *source* package ‘RJSONIO’ ...
Trying to find libjson.h header file
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
USE_LOCAL = ""
Minor Version: 4
Using local libjson code. Copying files from src/libjson/Source
/tmp/RtmpsdS7Dh/R.INSTALL327b23c6/RJSONIO
JSONAllocator.cpp
JSONChildren.cpp
JSONDebug.cpp
JSONIterators.cpp
JSONMemory.cpp
JSONNode.cpp
JSONNode_Mutex.cpp
JSONPreparse.cpp
JSONStream.cpp
JSONValidator.cpp
JSONWorker.cpp
JSONWriter.cpp
JSON_Base64.cpp
internalJSONNode.cpp
libjson.cpp
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating cleanup
** libs
gcc -std=gnu99 -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c ConvertUTF.c -o
ConvertUTF.o
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONAllocator.cpp
-o JSONAllocator.o
In file included from libjson/Source/JSONAllocator.h:4,
from JSONAllocator.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONChildren.cpp
-o JSONChildren.o
In file included from libjson/Source/JSONMemory.h:6,
from libjson/Source/JSONChildren.h:6,
from JSONChildren.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONDebug.cpp -o
JSONDebug.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from JSONDebug.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONIterators.cpp
-o JSONIterators.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/JSONNode.h:4,
from JSONIterators.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONMemory.cpp -o
JSONMemory.o
In file included from libjson/Source/JSONMemory.h:6,
from JSONMemory.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONNode.cpp -o
JSONNode.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/JSONNode.h:4,
from JSONNode.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONNode_Mutex.cpp
-o JSONNode_Mutex.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/JSONNode.h:4,
from JSONNode_Mutex.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONPreparse.cpp
-o JSONPreparse.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/JSONPreparse.h:4,
from JSONPreparse.cpp:10:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONStream.cpp -o
JSONStream.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/JSONStream.h:4,
from JSONStream.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONValidator.cpp
-o JSONValidator.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/JSONValidator.h:4,
from JSONValidator.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONWorker.cpp -o
JSONWorker.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/JSONNode.h:4,
from libjson/Source/JSONWorker.h:4,
from JSONWorker.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSONWriter.cpp -o
JSONWriter.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/JSONNode.h:4,
from JSONWriter.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSON_Base64.cpp -o
JSON_Base64.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/JSON_Base64.h:4,
from JSON_Base64.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
gcc -std=gnu99 -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c JSON_parser.c -o
JSON_parser.o
gcc -std=gnu99 -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c RJSON.c -o RJSON.o
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c
internalJSONNode.cpp -o internalJSONNode.o
In file included from libjson/Source/JSONDefs.h:10,
from libjson/Source/JSONDebug.h:4,
from libjson/Source/internalJSONNode.h:4,
from internalJSONNode.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c libjson.cpp -o
libjson.o
In file included from libjson/Source/../Source/JSONDefs.h:10,
from libjson/Source/../libjson.h:4,
from libjson.cpp:8:
libjson/Source/../Source/../JSONOptions.h:120:1: warning:
"JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../Source/../JSONOptions.h:256:1: warning:
"JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
gcc -std=gnu99 -I/usr/share/R/include -I. -Ilibjson -Ilibjson/Source
-DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1
-DJSON_LIBRARY=1 -DJSON_ISO_STRICT -fpic -g -O2 -c rlibjson.c -o
rlibjson.o
In file included from ./libjson/Source/JSONDefs.h:10,
from ./libjson/libjson.h:4,
from rlibjson.c:1:
./libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM"
redefined
<command-line>: warning: this is the location of the previous definition
./libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE"
redefined
<command-line>: warning: this is the location of the previous definition
g++ -shared -o RJSONIO.so ConvertUTF.o JSONAllocator.o JSONChildren.o
JSONDebug.o JSONIterators.o JSONMemory.o JSONNode.o JSONNode_Mutex.o
JSONPreparse.o JSONStream.o JSONValidator.o JSONWorker.o JSONWriter.o
JSON_Base64.o JSON_parser.o RJSON.o internalJSONNode.o libjson.o rlibjson.o
-L/usr/lib/R/lib -lR
** R
** inst
** preparing package for lazy loading
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "isValidJSON" no definition for
class: “AsIs”
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "isValidJSON" no definition for
class: “connection”
Error in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "toJSON": formal arguments omitted in the
method
definition cannot be in the signature (.escapeEscapes = "NA")
Error : unable to load R code in package 'RJSONIO'
ERROR: lazy loading failed for package ‘RJSONIO’
* removing ‘/usr/local/lib/R/site-library/RJSONIO’
The downloaded packages are in
‘/tmp/Rtmpu4cqIq/downloaded_packages’
Warning message:
In install.packages("RJSONIO") :
installation of package 'RJSONIO' had non-zero exit
status>
Can you please suggest whats going wrong here?
Regards,
mlsc
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