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HJ YAN

2012-Jun-08 02:08 UTC

[R] Resolution issue with exporting plots from R and write tables in Latex code for producing pdf document

Dear R users

I am trying to exporting plots from R to an external folder, or to the
working directory, but the resolution of plots (pdf file) largely reduced.
Any way I can get same quality as my original plots?? e.g. I tested the
plotting part using one example and obtained pretty good (/readable)
quality for each plot in the (4*4) multiple graph. But when I did the loop
and tried to export those plots out using 'dev.copy', the quality was
not
same. I do need this loop function as there are 400 datasets so I can not
handle them manually.

Also I am using 'xtable' to write Latex code for my summary tables of
the
data (again there are 400 datasets). I saved those Latex code in a list and
use 'sink()' to save them outside the loop function, which works ok. But
as
my table is wide, so I found that the Latex code produced by xtable can not
fit my purpose well, e.g. I have set size to 'tiny' but the table still
too
wide. Is there an alternative package more handy to do the job? Also are
there a good way to write some hundred tables from R to Latex for producing
pdf documents in an easier fashion?? i.e. Just realised that Latex does not
like compiling large amount tables/figures in one go!

Any advices/ideas are greatly appreciated!


Best wishes
HJ




Below is my code...
====================SumTab<-function(Data=SortedDataInList,StartDate="30/1/12",EndDate="31/05/12",StartTime="22:50:00",EndTime="23:00:00"){
  Start= chron(StartDate,StartTime , format=c(dates="d/m/y",
times="h:m:s"))
  End= chron(EndDate,EndTime , format=c(dates="d/m/y",
times="h:m:s"))
  deltat <- times("00:10:00")
  TT <- seq(Start,End, by = times("00:10:00"))
  TT1 = substr(TT, 2, 18)


  Data1=Data
  for (i in 1:length(Data1)){
    SumTab1[[i]]= matrix(NA, nrow=5, ncol=ncol(SortedDataInList[[i]])-4)
    SortedDataInList1[[i]]= matrix(NA, nrow=length(TT1),
ncol=ncol(Data1[[i]]))

SortedDataInList1[[i]]=Data1[[i]][match(as.character(TT1),as.character(Data1[[i]][,1])),]


    SumTab1[[i]][1,]<-apply(SortedDataInList1[[i]][,4:16],2,min)
    SumTab1[[i]][2,]<-apply(SortedDataInList1[[i]][,4:16],2,mean)
    SumTab1[[i]][3,]<-apply(SortedDataInList1[[i]][,4:16],2,median)
    SumTab1[[i]][4,]<-apply(SortedDataInList1[[i]][,4:16],2,sd)
    SumTab1[[i]][5,]<-apply(SortedDataInList1[[i]][,4:16],2,max)



colnames(SumTab1[[i]])=c("vOL1","VOL2","VOL3","CUR1","CUR2","CUR3","THD1","THD2","THD3","RPD","RPR","RAPD","RAPR")
    rownames(SumTab1[[i]])=c("Min","Mean","Standard
Deviation","Median","Max")


SumLax[[i]]<-xtable(SumTab1[[i]],label=as.character(StationsInDir[i]),caption=as.character(StationsInDir[i]))


    par(mfrow=c(4,4),oma=c(4,0,2,0))

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,4],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Voltage
1 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,5],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Voltage
2 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,6],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Voltage
3 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,7],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Current
1 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,8],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Current
2 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,9],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Current
3 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,10],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Total
harmonic distortion 1 (%)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,11],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Total
harmonic distortion 2 (%)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,12],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Total
harmonic distortion 3 (%)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,13],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Real
power delivered  (mw)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,14],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Real
power received  (mw)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,15],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Reactive
power delivered (MVAr)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)

plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,16],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Reactive
power received (MVAr)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
    title(main=StationsInDir[i],outer=TRUE,cex.main=2.0)
    mtext(side=1,Start, outer = TRUE, line=0,cex = 0.6)
    mtext(side=1,End, outer = TRUE, line=2,cex = 0.6)


    #pdf(paste(as.character(StationsInDir[i]),".pdf"))
    dev.copy(pdf,file=paste(as.character(StationsInDir[i]),".pdf"))
    dev.off()

  }
}

	[[alternative HTML version deleted]]

Duncan Murdoch

2012-Jun-08 09:21 UTC

head link

[R] Resolution issue with exporting plots from R and write tables in Latex code for producing pdf document

On 12-06-07 10:08 PM, HJ YAN wrote:> Dear R users
>
> I am trying to exporting plots from R to an external folder, or to the
> working directory, but the resolution of plots (pdf file) largely reduced.
> Any way I can get same quality as my original plots?? e.g. I tested the
> plotting part using one example and obtained pretty good (/readable)
> quality for each plot in the (4*4) multiple graph. But when I did the loop
> and tried to export those plots out using 'dev.copy', the quality
was not
> same. I do need this loop function as there are 400 datasets so I can not
> handle them manually.
Don't use dev.copy.  Use pdf() then dev.off() to produce the plots in 
the first place.

>
> Also I am using 'xtable' to write Latex code for my summary tables
of the
> data (again there are 400 datasets). I saved those Latex code in a list and
> use 'sink()' to save them outside the loop function, which works
ok. But as
> my table is wide, so I found that the Latex code produced by xtable can not
> fit my purpose well, e.g. I have set size to 'tiny' but the table
still too
> wide. Is there an alternative package more handy to do the job? Also are
> there a good way to write some hundred tables from R to Latex for producing
> pdf documents in an easier fashion?? i.e. Just realised that Latex does not
> like compiling large amount tables/figures in one go!
latex has a lot of packages for handling large tables, but it may be 
better to redesign your table to not be so wide.  The tables package 
might help with this, but it doesn't have any particular support for 
wide tables.

Duncan Murdoch


>
> Any advices/ideas are greatly appreciated!
>
>
> Best wishes
> HJ
>
>
>
>
> Below is my code...
> ====================>
SumTab<-function(Data=SortedDataInList,StartDate="30/1/12",EndDate="31/05/12",StartTime="22:50:00",EndTime="23:00:00"){
>    Start= chron(StartDate,StartTime , format=c(dates="d/m/y",
times="h:m:s"))
>    End= chron(EndDate,EndTime , format=c(dates="d/m/y",
times="h:m:s"))
>    deltat<- times("00:10:00")
>    TT<- seq(Start,End, by = times("00:10:00"))
>    TT1 = substr(TT, 2, 18)
>
>
>    Data1=Data
>    for (i in 1:length(Data1)){
>      SumTab1[[i]]= matrix(NA, nrow=5, ncol=ncol(SortedDataInList[[i]])-4)
>      SortedDataInList1[[i]]= matrix(NA, nrow=length(TT1),
> ncol=ncol(Data1[[i]]))
>
>
SortedDataInList1[[i]]=Data1[[i]][match(as.character(TT1),as.character(Data1[[i]][,1])),]
>
>
>      SumTab1[[i]][1,]<-apply(SortedDataInList1[[i]][,4:16],2,min)
>      SumTab1[[i]][2,]<-apply(SortedDataInList1[[i]][,4:16],2,mean)
>      SumTab1[[i]][3,]<-apply(SortedDataInList1[[i]][,4:16],2,median)
>      SumTab1[[i]][4,]<-apply(SortedDataInList1[[i]][,4:16],2,sd)
>      SumTab1[[i]][5,]<-apply(SortedDataInList1[[i]][,4:16],2,max)
>
>
>
>
colnames(SumTab1[[i]])=c("vOL1","VOL2","VOL3","CUR1","CUR2","CUR3","THD1","THD2","THD3","RPD","RPR","RAPD","RAPR")
>     
rownames(SumTab1[[i]])=c("Min","Mean","Standard
> Deviation","Median","Max")
>
>
>
SumLax[[i]]<-xtable(SumTab1[[i]],label=as.character(StationsInDir[i]),caption=as.character(StationsInDir[i]))
>
>
>      par(mfrow=c(4,4),oma=c(4,0,2,0))
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,4],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Voltage
> 1 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,5],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Voltage
> 2 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,6],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Voltage
> 3 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,7],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Current
> 1 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,8],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Current
> 2 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,9],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Current
> 3 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,10],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Total
> harmonic distortion 1 (%)",xlab="Date/Time ind.(10 min.
> int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,11],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Total
> harmonic distortion 2 (%)",xlab="Date/Time ind.(10 min.
> int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,12],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Total
> harmonic distortion 3 (%)",xlab="Date/Time ind.(10 min.
> int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,13],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Real
> power delivered  (mw)",xlab="Date/Time ind.(10 min.
> int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,14],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Real
> power received  (mw)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,15],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Reactive
> power delivered (MVAr)",xlab="Date/Time ind.(10 min.
> int.)",type="p",cex=.001)
>
>
plot(1:length(SortedDataInList1[[i]][,1]),SortedDataInList1[[i]][,16],xlim=c(1,length(SortedDataInList1[[i]][,1])),ylab="Reactive
> power received (MVAr)",xlab="Date/Time ind.(10 min.
> int.)",type="p",cex=.001)
>      title(main=StationsInDir[i],outer=TRUE,cex.main=2.0)
>      mtext(side=1,Start, outer = TRUE, line=0,cex = 0.6)
>      mtext(side=1,End, outer = TRUE, line=2,cex = 0.6)
>
>
>      #pdf(paste(as.character(StationsInDir[i]),".pdf"))
>     
dev.copy(pdf,file=paste(as.character(StationsInDir[i]),".pdf"))
>      dev.off()
>
>    }
> }
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

HJ YAN

2012-Jun-08 14:42 UTC

head link

[R] Resolution issue with exporting plots from R and write tables in Latex code for producing pdf document

>
> Dear Duncan
>
> Many thanks again for your help!
>
> Now I've mended my code in the following simplified form:
>
>
>
pdf("filename.pdf",paper="a4",width=8,height=12,encoding="default")
> par(mfrow=c(2,2))
>
>
plot(1:length(SortedDataInList1[[3]][,1]),SortedDataInList1[[3]][,4],xlim=c(1,length(SortedDataInList1[[3]][,1])),ylab="Voltage
> 1 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.0001)
> plot(...)
> plot(...)
> plot(...)
> dev.off()
>
> And I think that has included all features I need but the outputs I
> got only appear to show part of the figures, e.g. the frame, values on
> x-axes (e.g. 1:length(SortedDataInList1[[3]][,1])), xlab, ylab, titles,
> subtitles are all shown. But not  values on y-axes,
> e.g. 'SortedDataInList1[[3]][,i]' for i=4,5,6... So just 4 blank
frames
> with no data in the figure!
>
> Have I missed to put in some important arguments in this line??
>
> 
pdf("filename.pdf",paper="a4",width=8,height=12,encoding="default")
>
>
> I have tested that the 'middle part' of my code (as shown below)
works
> fine and I can get the plots as I wanted.
> ==============>  par(mfrow=c(2,2))
>
plot(1:length(SortedDataInList1[[3]][,1]),SortedDataInList1[[3]][,4],xlim=c(1,length(SortedDataInList1[[3]][,1])),ylab="Voltage
> 1 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.0001)
> plot(...)
> plot(...)
> plot(...)
> ===============>
> Many many thanks!
>
> HJ
>
>
>
>
> On Fri, Jun 8, 2012 at 11:53 AM, Duncan Murdoch
<murdoch.duncan@gmail.com>wrote:
>
>> On 12-06-08 6:46 AM, yhj204@googlemail.com wrote:
>>
>>> Dear Duncan
>>>
>>>
>>>
>>> Thanks a lot for your hints.
>>>
>>> As you can see from my code (just one line above the command using
>>> dev.copy) I have tried using pdf but got same problem, so I hushed
it out.
>>>
>>
>> That's not the right place to put the pdf() call, it should appear
before
>> any of the graphing calls.  To keep the pdf resolution, you need to
plot to
>> the pdf device.
>>
>> Duncan Murdoch
>>
>>
>>
>>> Any ideas??
>>>
>>> Many thanks!
>>>
>>> HJ
>>> Sent using BlackBerry® from Orange
>>>
>>> -----Original Message-----
>>> From: Duncan
Murdoch<murdoch.duncan@gmail.**com<murdoch.duncan@gmail.com>
>>> >
>>> Date: Fri, 08 Jun 2012 05:21:52
>>> To: HJ YAN<yhj204@googlemail.com>
>>> Cc: r-help@r-project.org<r-help@r-**project.org
<r-help@r-project.org>>
>>> Subject: Re: [R] Resolution issue with exporting plots from R and
write
>>> tables
>>>  in Latex code for producing pdf document
>>>
>>> On 12-06-07 10:08 PM, HJ YAN wrote:
>>>
>>>> Dear R users
>>>>
>>>> I am trying to exporting plots from R to an external folder, or
to the
>>>> working directory, but the resolution of plots (pdf file)
largely
>>>> reduced.
>>>> Any way I can get same quality as my original plots?? e.g. I
tested the
>>>> plotting part using one example and obtained pretty good
(/readable)
>>>> quality for each plot in the (4*4) multiple graph. But when I
did the
>>>> loop
>>>> and tried to export those plots out using 'dev.copy',
the quality was
>>>> not
>>>> same. I do need this loop function as there are 400 datasets so
I can
>>>> not
>>>> handle them manually.
>>>>
>>>
>>> Don't use dev.copy.  Use pdf() then dev.off() to produce the
plots in
>>> the first place.
>>>
>>>
>>>
>>>> Also I am using 'xtable' to write Latex code for my
summary tables of
>>>> the
>>>> data (again there are 400 datasets). I saved those Latex code
in a list
>>>> and
>>>> use 'sink()' to save them outside the loop function,
which works ok.
>>>> But as
>>>> my table is wide, so I found that the Latex code produced by
xtable can
>>>> not
>>>> fit my purpose well, e.g. I have set size to 'tiny' but
the table still
>>>> too
>>>> wide. Is there an alternative package more handy to do the job?
Also are
>>>> there a good way to write some hundred tables from R to Latex
for
>>>> producing
>>>> pdf documents in an easier fashion?? i.e. Just realised that
Latex does
>>>> not
>>>> like compiling large amount tables/figures in one go!
>>>>
>>>
>>> latex has a lot of packages for handling large tables, but it may
be
>>> better to redesign your table to not be so wide.  The tables
package
>>> might help with this, but it doesn't have any particular
support for
>>> wide tables.
>>>
>>> Duncan Murdoch
>>>
>>>
>>>
>>>
>>>> Any advices/ideas are greatly appreciated!
>>>>
>>>>
>>>> Best wishes
>>>> HJ
>>>>
>>>>
>>>>
>>>>
>>>> Below is my code...
>>>> ====================>>>>
SumTab<-function(Data=**SortedDataInList,StartDate="**
>>>>
30/1/12",EndDate="31/05/12",**StartTime="22:50:00",EndTime="**
>>>> 23:00:00"){
>>>>    Start= chron(StartDate,StartTime ,
format=c(dates="d/m/y",
>>>> times="h:m:s"))
>>>>    End= chron(EndDate,EndTime ,
format=c(dates="d/m/y", times="h:m:s"))
>>>>    deltat<- times("00:10:00")
>>>>    TT<- seq(Start,End, by = times("00:10:00"))
>>>>    TT1 = substr(TT, 2, 18)
>>>>
>>>>
>>>>    Data1=Data
>>>>    for (i in 1:length(Data1)){
>>>>      SumTab1[[i]]= matrix(NA, nrow=5,
ncol=ncol(SortedDataInList[[i]**
>>>> ])-4)
>>>>      SortedDataInList1[[i]]= matrix(NA, nrow=length(TT1),
>>>> ncol=ncol(Data1[[i]]))
>>>>
>>>> SortedDataInList1[[i]]=Data1[[**i]][match(as.character(TT1),**
>>>> as.character(Data1[[i]][,1])),**]
>>>>
>>>>
>>>>     
SumTab1[[i]][1,]<-apply(**SortedDataInList1[[i]][,4:16],**2,min)
>>>>     
SumTab1[[i]][2,]<-apply(**SortedDataInList1[[i]][,4:16],**2,mean)
>>>>     
SumTab1[[i]][3,]<-apply(**SortedDataInList1[[i]][,4:16],**
>>>> 2,median)
>>>>     
SumTab1[[i]][4,]<-apply(**SortedDataInList1[[i]][,4:16],**2,sd)
>>>>     
SumTab1[[i]][5,]<-apply(**SortedDataInList1[[i]][,4:16],**2,max)
>>>>
>>>>
>>>>
>>>>
colnames(SumTab1[[i]])=c("**vOL1","VOL2","VOL3","CUR1","**
>>>>
CUR2","CUR3","THD1","THD2","**THD3","RPD","RPR","RAPD","**RAPR")
>>>>     
rownames(SumTab1[[i]])=c("Min"**,"Mean","Standard
>>>> Deviation","Median","Max")
>>>>
>>>>
>>>> SumLax[[i]]<-xtable(SumTab1[[**i]],label=as.character(**
>>>> StationsInDir[i]),caption=as.**character(StationsInDir[i]))
>>>>
>>>>
>>>>      par(mfrow=c(4,4),oma=c(4,0,2,**0))
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,4],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Voltage
>>>> 1 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,5],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Voltage
>>>> 2 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,6],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Voltage
>>>> 3 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,7],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Current
>>>> 1 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,8],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Current
>>>> 2 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,9],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Current
>>>> 3 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,10],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Total
>>>> harmonic distortion 1 (%)",xlab="Date/Time ind.(10
min.
>>>> int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,11],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Total
>>>> harmonic distortion 2 (%)",xlab="Date/Time ind.(10
min.
>>>> int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,12],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Total
>>>> harmonic distortion 3 (%)",xlab="Date/Time ind.(10
min.
>>>> int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,13],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Real
>>>> power delivered  (mw)",xlab="Date/Time ind.(10 min.
>>>> int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,14],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Real
>>>> power received  (mw)",xlab="Date/Time ind.(10 min.
>>>> int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,15],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Reactive
>>>> power delivered (MVAr)",xlab="Date/Time ind.(10 min.
>>>> int.)",type="p",cex=.001)
>>>>
>>>> plot(1:length(**SortedDataInList1[[i]][,1]),**
>>>> SortedDataInList1[[i]][,16],**xlim=c(1,length(**
>>>> SortedDataInList1[[i]][,1])),**ylab="Reactive
>>>> power received (MVAr)",xlab="Date/Time ind.(10 min.
>>>> int.)",type="p",cex=.001)
>>>>      title(main=StationsInDir[i],**outer=TRUE,cex.main=2.0)
>>>>      mtext(side=1,Start, outer = TRUE, line=0,cex = 0.6)
>>>>      mtext(side=1,End, outer = TRUE, line=2,cex = 0.6)
>>>>
>>>>
>>>>     
#pdf(paste(as.character(**StationsInDir[i]),".pdf"))
>>>>     
dev.copy(pdf,file=paste(as.**character(StationsInDir[i]),".**
>>>> pdf"))
>>>>      dev.off()
>>>>
>>>>    }
>>>> }
>>>>
>>>>        [[alternative HTML version deleted]]
>>>>
>>>> ______________________________**________________
>>>> R-help@r-project.org mailing list
>>>>
https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
>>>> PLEASE do read the posting guide http://www.R-project.org/**
>>>> posting-guide.html
<http://www.r-project.org/posting-guide.html>
>>>> and provide commented, minimal, self-contained, reproducible
code.
>>>>
>>>
>>>
>>
>
	[[alternative HTML version deleted]]

Duncan Murdoch

2012-Jun-08 15:01 UTC

head link

[R] Resolution issue with exporting plots from R and write tables in Latex code for producing pdf document

On 08/06/2012 10:42 AM, HJ YAN wrote:> >
> >  Dear Duncan
> >
> >  Many thanks again for your help!
> >
> >  Now I've mended my code in the following simplified form:
> >
> >
> > 
pdf("filename.pdf",paper="a4",width=8,height=12,encoding="default")
> >  par(mfrow=c(2,2))
> >
> > 
plot(1:length(SortedDataInList1[[3]][,1]),SortedDataInList1[[3]][,4],xlim=c(1,length(SortedDataInList1[[3]][,1])),ylab="Voltage
> >  1 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.0001)
> >  plot(...)
> >  plot(...)
> >  plot(...)
> >  dev.off()
Sorry, but I can't guess what all the missing parts contain.  If you can 
post a simplified, self-contained example, I'll take a look.

Duncan Murdoch
> >
> >  And I think that has included all features I need but the outputs I
> >  got only appear to show part of the figures, e.g. the frame, values
on
> >  x-axes (e.g. 1:length(SortedDataInList1[[3]][,1])), xlab, ylab,
titles,
> >  subtitles are all shown. But not  values on y-axes,
> >  e.g. 'SortedDataInList1[[3]][,i]' for i=4,5,6... So just 4
blank frames
> >  with no data in the figure!
> >
> >  Have I missed to put in some important arguments in this line??
> >
> >  
pdf("filename.pdf",paper="a4",width=8,height=12,encoding="default")
> >
> >
> >  I have tested that the 'middle part' of my code (as shown
below) works
> >  fine and I can get the plots as I wanted.
> >  ==============> >   par(mfrow=c(2,2))
> > 
plot(1:length(SortedDataInList1[[3]][,1]),SortedDataInList1[[3]][,4],xlim=c(1,length(SortedDataInList1[[3]][,1])),ylab="Voltage
> >  1 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.0001)
> >  plot(...)
> >  plot(...)
> >  plot(...)
> >  ===============> >
> >  Many many thanks!
> >
> >  HJ
> >
> >
> >
> >
> >  On Fri, Jun 8, 2012 at 11:53 AM, Duncan Murdoch<murdoch.duncan at
gmail.com>wrote:
> >
> >>  On 12-06-08 6:46 AM, yhj204 at googlemail.com wrote:
> >>
> >>>  Dear Duncan
> >>>
> >>>
> >>>
> >>>  Thanks a lot for your hints.
> >>>
> >>>  As you can see from my code (just one line above the command
using
> >>>  dev.copy) I have tried using pdf but got same problem, so I
hushed it out.
> >>>
> >>
> >>  That's not the right place to put the pdf() call, it should
appear before
> >>  any of the graphing calls.  To keep the pdf resolution, you need
to plot to
> >>  the pdf device.
> >>
> >>  Duncan Murdoch
> >>
> >>
> >>
> >>>  Any ideas??
> >>>
> >>>  Many thanks!
> >>>
> >>>  HJ
> >>>  Sent using BlackBerry? from Orange
> >>>
> >>>  -----Original Message-----
> >>>  From: Duncan Murdoch<murdoch.duncan at
gmail.**com<murdoch.duncan at gmail.com>
> >>>  >
> >>>  Date: Fri, 08 Jun 2012 05:21:52
> >>>  To: HJ YAN<yhj204 at googlemail.com>
> >>>  Cc: r-help at r-project.org<r-help at
r-**project.org<r-help at r-project.org>>
> >>>  Subject: Re: [R] Resolution issue with exporting plots from R
and write
> >>>  tables
> >>>   in Latex code for producing pdf document
> >>>
> >>>  On 12-06-07 10:08 PM, HJ YAN wrote:
> >>>
> >>>>  Dear R users
> >>>>
> >>>>  I am trying to exporting plots from R to an external
folder, or to the
> >>>>  working directory, but the resolution of plots (pdf file)
largely
> >>>>  reduced.
> >>>>  Any way I can get same quality as my original plots??
e.g. I tested the
> >>>>  plotting part using one example and obtained pretty good
(/readable)
> >>>>  quality for each plot in the (4*4) multiple graph. But
when I did the
> >>>>  loop
> >>>>  and tried to export those plots out using
'dev.copy', the quality was
> >>>>  not
> >>>>  same. I do need this loop function as there are 400
datasets so I can
> >>>>  not
> >>>>  handle them manually.
> >>>>
> >>>
> >>>  Don't use dev.copy.  Use pdf() then dev.off() to produce
the plots in
> >>>  the first place.
> >>>
> >>>
> >>>
> >>>>  Also I am using 'xtable' to write Latex code for
my summary tables of
> >>>>  the
> >>>>  data (again there are 400 datasets). I saved those Latex
code in a list
> >>>>  and
> >>>>  use 'sink()' to save them outside the loop
function, which works ok.
> >>>>  But as
> >>>>  my table is wide, so I found that the Latex code produced
by xtable can
> >>>>  not
> >>>>  fit my purpose well, e.g. I have set size to
'tiny' but the table still
> >>>>  too
> >>>>  wide. Is there an alternative package more handy to do
the job? Also are
> >>>>  there a good way to write some hundred tables from R to
Latex for
> >>>>  producing
> >>>>  pdf documents in an easier fashion?? i.e. Just realised
that Latex does
> >>>>  not
> >>>>  like compiling large amount tables/figures in one go!
> >>>>
> >>>
> >>>  latex has a lot of packages for handling large tables, but it
may be
> >>>  better to redesign your table to not be so wide.  The tables
package
> >>>  might help with this, but it doesn't have any particular
support for
> >>>  wide tables.
> >>>
> >>>  Duncan Murdoch
> >>>
> >>>
> >>>
> >>>
> >>>>  Any advices/ideas are greatly appreciated!
> >>>>
> >>>>
> >>>>  Best wishes
> >>>>  HJ
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>  Below is my code...
> >>>>  ====================> >>>> 
SumTab<-function(Data=**SortedDataInList,StartDate="**
> >>>> 
30/1/12",EndDate="31/05/12",**StartTime="22:50:00",EndTime="**
> >>>>  23:00:00"){
> >>>>     Start= chron(StartDate,StartTime ,
format=c(dates="d/m/y",
> >>>>  times="h:m:s"))
> >>>>     End= chron(EndDate,EndTime ,
format=c(dates="d/m/y", times="h:m:s"))
> >>>>     deltat<- times("00:10:00")
> >>>>     TT<- seq(Start,End, by =
times("00:10:00"))
> >>>>     TT1 = substr(TT, 2, 18)
> >>>>
> >>>>
> >>>>     Data1=Data
> >>>>     for (i in 1:length(Data1)){
> >>>>       SumTab1[[i]]= matrix(NA, nrow=5,
ncol=ncol(SortedDataInList[[i]**
> >>>>  ])-4)
> >>>>       SortedDataInList1[[i]]= matrix(NA, nrow=length(TT1),
> >>>>  ncol=ncol(Data1[[i]]))
> >>>>
> >>>> 
SortedDataInList1[[i]]=Data1[[**i]][match(as.character(TT1),**
> >>>>  as.character(Data1[[i]][,1])),**]
> >>>>
> >>>>
> >>>>      
SumTab1[[i]][1,]<-apply(**SortedDataInList1[[i]][,4:16],**2,min)
> >>>>      
SumTab1[[i]][2,]<-apply(**SortedDataInList1[[i]][,4:16],**2,mean)
> >>>>      
SumTab1[[i]][3,]<-apply(**SortedDataInList1[[i]][,4:16],**
> >>>>  2,median)
> >>>>      
SumTab1[[i]][4,]<-apply(**SortedDataInList1[[i]][,4:16],**2,sd)
> >>>>      
SumTab1[[i]][5,]<-apply(**SortedDataInList1[[i]][,4:16],**2,max)
> >>>>
> >>>>
> >>>>
> >>>> 
colnames(SumTab1[[i]])=c("**vOL1","VOL2","VOL3","CUR1","**
> >>>> 
CUR2","CUR3","THD1","THD2","**THD3","RPD","RPR","RAPD","**RAPR")
> >>>>      
rownames(SumTab1[[i]])=c("Min"**,"Mean","Standard
> >>>>  Deviation","Median","Max")
> >>>>
> >>>>
> >>>> 
SumLax[[i]]<-xtable(SumTab1[[**i]],label=as.character(**
> >>>> 
StationsInDir[i]),caption=as.**character(StationsInDir[i]))
> >>>>
> >>>>
> >>>>       par(mfrow=c(4,4),oma=c(4,0,2,**0))
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,4],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Voltage
> >>>>  1 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,5],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Voltage
> >>>>  2 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,6],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Voltage
> >>>>  3 (v)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,7],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Current
> >>>>  1 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,8],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Current
> >>>>  2 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,9],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Current
> >>>>  3 (A)",xlab="Date/Time ind.(10 min.
int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,10],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Total
> >>>>  harmonic distortion 1 (%)",xlab="Date/Time
ind.(10 min.
> >>>>  int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,11],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Total
> >>>>  harmonic distortion 2 (%)",xlab="Date/Time
ind.(10 min.
> >>>>  int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,12],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Total
> >>>>  harmonic distortion 3 (%)",xlab="Date/Time
ind.(10 min.
> >>>>  int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,13],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Real
> >>>>  power delivered  (mw)",xlab="Date/Time ind.(10
min.
> >>>>  int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,14],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Real
> >>>>  power received  (mw)",xlab="Date/Time ind.(10
min.
> >>>>  int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,15],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Reactive
> >>>>  power delivered (MVAr)",xlab="Date/Time ind.(10
min.
> >>>>  int.)",type="p",cex=.001)
> >>>>
> >>>>  plot(1:length(**SortedDataInList1[[i]][,1]),**
> >>>>  SortedDataInList1[[i]][,16],**xlim=c(1,length(**
> >>>>  SortedDataInList1[[i]][,1])),**ylab="Reactive
> >>>>  power received (MVAr)",xlab="Date/Time ind.(10
min.
> >>>>  int.)",type="p",cex=.001)
> >>>>      
title(main=StationsInDir[i],**outer=TRUE,cex.main=2.0)
> >>>>       mtext(side=1,Start, outer = TRUE, line=0,cex = 0.6)
> >>>>       mtext(side=1,End, outer = TRUE, line=2,cex = 0.6)
> >>>>
> >>>>
> >>>>      
#pdf(paste(as.character(**StationsInDir[i]),".pdf"))
> >>>>      
dev.copy(pdf,file=paste(as.**character(StationsInDir[i]),".**
> >>>>  pdf"))
> >>>>       dev.off()
> >>>>
> >>>>     }
> >>>>  }
> >>>>
> >>>>         [[alternative HTML version deleted]]
> >>>>
> >>>>  ______________________________**________________
> >>>>  R-help at r-project.org mailing list
> >>>> 
https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
> >>>>  PLEASE do read the posting guide
http://www.R-project.org/**
> >>>> 
posting-guide.html<http://www.r-project.org/posting-guide.html>
> >>>>  and provide commented, minimal, self-contained,
reproducible code.
> >>>>
> >>>
> >>>
> >>
> >
>

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