plot(codon3 ~ codon1, data = table) should work but I'm not in a position to
verify. If for some reason it doesn't does
plot(codon3 ~ codon1, data = as.data.frame(table))
get it?
Michael
On Mar 16, 2012, at 10:32 AM, aoife doherty <aoife.m.doherty at gmail.com>
wrote:
> Hey guys, can anyone help?
>
> i have a sample table:
>
>> table <- structure(c(4, 7, 0.2, 3, .1, 7, 222, 3, 10, 5, 11,
> 8, 8, 10, 7), .Dim = c(5L, 3L), .Dimnames = list(c("gene1",
> "gene2", "gene3", "gene4",
"gene5"), c("codon1", "codon2",
> "codon3")))
>
>> table
>
> codon1 codon2 codon3
> gene1 4.0 7 11
> gene2 7.0 222 8
> gene3 0.2 3 8
> gene4 3.0 10 10
> gene5 0.1 5 7
>
>
> i want to plot column 1 versus column 3.
>
> Does anyone know how to read in particular columns and plot?
>
> i was looking at this:
>
> https://stat.ethz.ch/pipermail/r-help/2007-July/137638.html
>
> but i can't seem to alter it to my needs
>
> Thank you
> Aoife
>
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>
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