I have been working on fitting Cox model for prediction by using rms package. I want to measure model's calibartion and discrimination. Discrimination was measured by using validate() in rms, Dxy can be transferred to Harrell's c index. But in this way, I cannot get 95%CI of c index. How can I do this in R? And by the way, what value should be in c index to present the model's well? Calibration was using calibrate() in rms, but I cannot get the calibration plot which presented the concorance of predicted and observed events in Cox model. How can I do this calibration plot of Cox model in R. -- View this message in context: http://r.789695.n4.nabble.com/Discrimination-and-calibration-of-Cox-model-tp4367927p4367927.html Sent from the R help mailing list archive at Nabble.com.
On Feb 7, 2012, at 11:07 PM, cmh wrote:> I have been working on fitting Cox model for prediction by using rms > package. > I want to measure model's calibartion and discrimination. > Discrimination was > measured by using validate() in rms, Dxy can be transferred to > Harrell's c > index. But in this way, I cannot get 95%CI of c index. How can I do > this in > R? And by the way, what value should be in c index to present the > model's > well?Harrell has answered this question several times on this list. It shouldn't be that difficult to search them out.> > Calibration was using calibrate() in rms, but I cannot get the > calibration > plot which presented the concorance of predicted and observed events > in Cox > model. How can I do this calibration plot of Cox model in R. >There _are_ worked examples on the help pages.> > > --David Winsemius, MD West Hartford, CT
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