Czerminski, Ryszard
2012-Jan-25 15:38 UTC
[R] Error in predict.randomForest ... subscript out of bounds with NULL name in X
RF trains fine with X, but fails on prediction> library(randomForest) > chirps <-c(20,16.0,19.8,18.4,17.1,15.5,14.7,17.1,15.4,16.2,15,17.2,16,17,14.1)> temp <-c(88.6,71.6,93.3,84.3,80.6,75.2,69.7,82,69.4,83.3,78.6,82.6,80.6,83.5,76 .3)> X <- cbind(1,chirps) > rf <- randomForest(X, temp) > yp <- predict(rf, X)Error in predict.randomForest(rf, X) : subscript out of bounds BTW: Just find out that apparently predict() does not like NULL name in X, because this works fine:> one <- rep(1, length(chirps)) > X <- cbind(one,chirps) > rf <- randomForest(X, temp) > yp <- predict(rf, X)Ryszard Czerminski AstraZeneca Pharmaceuticals LP 35 Gatehouse Drive Waltham, MA 02451 USA 781-839-4304 ryszard.czerminski@astrazeneca.com -------------------------------------------------------------------------- Confidentiality Notice: This message is private and may ...{{dropped:11}}
Liaw, Andy
2012-Jan-31 13:44 UTC
[R] indexing by empty string (was RE: Error in predict.randomForest ... subscript out of bounds with NULL name in X)
I'm not exactly sure if this is a problem with indexing by name; i.e., is the following behavior by design? The problem is that names or dimnames that are empty seem to be treated differently, and one can't index by them: R> junk = 1:3 R> names(junk) = c("a", "b", "") R> junk a b 1 2 3 R> junk[""] <NA> NA R> junk = matrix(1:4, 2, 2) R> colnames(junk) = c("a", "") R> junk[, ""] Error: subscript out of bounds I may need to find workaround...> -----Original Message----- > From: r-help-bounces at r-project.org > [mailto:r-help-bounces at r-project.org] On Behalf Of Czerminski, Ryszard > Sent: Wednesday, January 25, 2012 10:39 AM > To: r-help at r-project.org > Subject: [R] Error in predict.randomForest ... subscript out > of bounds with NULL name in X > > RF trains fine with X, but fails on prediction > > > library(randomForest) > > chirps <- > c(20,16.0,19.8,18.4,17.1,15.5,14.7,17.1,15.4,16.2,15,17.2,16,17,14.1) > > temp <- > c(88.6,71.6,93.3,84.3,80.6,75.2,69.7,82,69.4,83.3,78.6,82.6,80 > .6,83.5,76 > .3) > > X <- cbind(1,chirps) > > rf <- randomForest(X, temp) > > yp <- predict(rf, X) > Error in predict.randomForest(rf, X) : subscript out of bounds > > BTW: Just find out that apparently predict() does not like > NULL name in > X, because this works fine: > > > one <- rep(1, length(chirps)) > > X <- cbind(one,chirps) > > rf <- randomForest(X, temp) > > yp <- predict(rf, X) > > Ryszard Czerminski > AstraZeneca Pharmaceuticals LP > 35 Gatehouse Drive > Waltham, MA 02451 > USA > 781-839-4304 > ryszard.czerminski at astrazeneca.com > > > -------------------------------------------------------------- > ------------ > Confidentiality Notice: This message is private and may > ...{{dropped:11}} > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >Notice: This e-mail message, together with any attachme...{{dropped:11}}