R help - Nov 2011 - how to normalize a subset of affy data using MAS5 method

Dear all,

          I was trying to normalize a subset of affy data those transcribe
are either P or M (called pm_filter).  I am able to normalize pm_filter
subset by using RMA method, however MAS5 is not working.

For RMA method, I used the following commend:  est<-rma(affydata,
subset=pm_filter).  Could any help me; how do I do this by using MAS5
method?

Regards,
Anup Som

-- 
Dr. Anup Som, Ph.D.
Institute for Biostatistics and Informatics in Medicine and Ageing Research
University of Rostock, Medical Faculty
Ernst-Heydemann-Str. 8, 18057 Rostock, Germany
Tel:  +49 381 494 7308
Fax:  +49 381 494 7203
E-mail: anup.som@uni-rostock.de
http://www.ibima.med.uni-rostock.de/

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On 11/18/2011 02:55 AM, Anup Som wrote:
> Dear all,
>
>            I was trying to normalize a subset of affy data those transcribe
> are either P or M (called pm_filter).  I am able to normalize pm_filter
> subset by using RMA method, however MAS5 is not working.
>
> For RMA method, I used the following commend:  est<-rma(affydata,
> subset=pm_filter).  Could any help me; how do I do this by using MAS5
> method?
Hi --

You'll get knowledgeable help on the Bioconductor mailing list; posting 
does not require subscription.

http://bioconductor.org/help/mailing-list/

Martin
>
> Regards,
> Anup Som
>

-- 
Computational Biology
Fred Hutchinson Cancer Research Center
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Location: M1-B861
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