Søren Højsgaard
2011-Sep-15 08:34 UTC
[R] Can't get installing a package source (.tar.gz) from a web page to work...
I have created an R-package with datasets which I want my students to install (the package is not on CRAN). 1) I've put the package on the web in a directory called 'data' and I thought I could do:> install.packages("http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz",repos=NULL,type="source")Warning: invalid package 'http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz' Error: ERROR: no packages specified Warning messages: 1: running command 'C:/programs/R/current/bin/i386/R CMD INSTALL -l "C:/programs/R/current/library" "http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz"' had status 1 2: In install.packages("http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz", : installation of package 'http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz' had non-zero exit status 2) I've then put the package in data/src/contrib/ and try:> install.packages('LiSciData_0.0-03.tar.gz',repos='http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/', type='source')Warning: unable to access index for repository http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/src/contrib Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ?LiSciData_0.0-03.tar.gz? is not available (for R version 2.13.1) 3) If I put the package in the Rs working directory then the following works:> install.packages("LiSciData_0.0-03.tar.gz",repos=NULL,type="source")I would much prefer if it could be done directly from the web in the spirit of attempt 1) above (because then fewer things can go wrong for the students). Any hint on what I am doing wrong? sessionInfo() shown below. Regards S?ren> sessionInfo()R version 2.13.1 (2011-07-08) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=Danish_Denmark.1252 LC_CTYPE=Danish_Denmark.1252 LC_MONETARY=Danish_Denmark.1252 LC_NUMERIC=C LC_TIME=Danish_Denmark.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] SHDtools_1.0 loaded via a namespace (and not attached): [1] tools_2.13.1
Uwe Ligges
2011-Sep-15 08:46 UTC
[R] Can't get installing a package source (.tar.gz) from a web page to work...
On 15.09.2011 10:34, S?ren H?jsgaard wrote:> I have created an R-package with datasets which I want my students to install (the package is not on CRAN). > > 1) I've put the package on the web in a directory called 'data' and I thought I could do: > >> install.packages("http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz",repos=NULL,type="source") > > Warning: invalid package 'http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz' > Error: ERROR: no packages specified > Warning messages: > 1: running command 'C:/programs/R/current/bin/i386/R CMD INSTALL -l "C:/programs/R/current/library" "http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz"' had status 1 > 2: In install.packages("http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz", : > installation of package 'http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz' had non-zero exit statusRight, install.packages assumes a package name or a file path. URLs (or any othr connections) are not supported.> 2) I've then put the package in data/src/contrib/ and try: > >> install.packages('LiSciData_0.0-03.tar.gz',repos='http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/', type='source') > Warning: unable to access index for repository http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/src/contrib > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > package ?LiSciData_0.0-03.tar.gz? is not available (for R version 2.13.1)If you want to use it as a repository, you have to make such a repository. For a source repository, create subdirs ./src/contrib and put your package there. Afterwards, you can run tools::write_PACKAGES on that directory in order to create PACKAGES and PACKAGES.gz files for that repository.> 3) If I put the package in the Rs working directory then the following works: >> install.packages("LiSciData_0.0-03.tar.gz",repos=NULL,type="source")Right, hence you can also tell your students to: download.file("http://gbi.agrsci.dk/statistics/courses/2011-ISMLS-course/data/LiSciData_0.0-03.tar.gz", tempdir()) install.packages(file.path(tempdir(), 'LiSciData_0.0-03.tar.gz'), repos=NULL, type='source') Best wishes, Uee> I would much prefer if it could be done directly from the web in the spirit of attempt 1) above (because then fewer things can go wrong for the students). Any hint on what I am doing wrong? sessionInfo() shown below. > > Regards > S?ren > > > >> sessionInfo() > R version 2.13.1 (2011-07-08) > Platform: i386-pc-mingw32/i386 (32-bit) > locale: > [1] LC_COLLATE=Danish_Denmark.1252 LC_CTYPE=Danish_Denmark.1252 LC_MONETARY=Danish_Denmark.1252 LC_NUMERIC=C LC_TIME=Danish_Denmark.1252 > attached base packages: > [1] stats graphics grDevices utils datasets methods base > other attached packages: > [1] SHDtools_1.0 > loaded via a namespace (and not attached): > [1] tools_2.13.1 > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.