Hello all-
I'm having a problem with odfWeave. I'm still testing it out, and have
used both of these code chunks, which I copied off a blog:
Number 1:
A sample document last processed
\Sexpr{Sys.time()}.
This simply illustrates the output from an
R command inserted into our document.
This is using \Sexpr{version$version.string}.
Number 2:
<<Sample1>>
summary(iris)
@
Both do the same thing, which is generate the document using this code:
odfWeave("/media/Windows7/temp/GCAMT_in.odt",
"/media/Windows7/temp/GCAMT_out2.odt")
But the output repeats over and over in the document in a bizarre way,
stretching out over about 9 pages, like this (abbreviated):
A sample document last processed
2011-08-12 09:55:51.
This simply illustrates the output from an
R command inserted into our document.
This is using R version 2.12.1 (2010-12-16).
...
A sample document last processedA sample document last processed
2011-08-12 09:55:51.2011-08-12 09:55:51.
This simply illustrates the output from anThis simply illustrates the
output from an
R command inserted into our document.R command inserted into our document.
This is using R version 2.12.1 (2010-12-16).This is using R version
2.12.1 (2010-12-16).
...
etc.
The really weird thing is that I have replicated the problem across
two operating systems (dual boot on the same computer), windows 7
64bit and Linux Mint 11 (which is Ubuntu, not sure which version I'm
afraid). I've been unable to find anyone on any forums or anything
with the same problem.
Using R v2.13 on Windows, v 2.12 on Linux, was using RStudio but just
tested it without (just in case) and it does the same thing.
Any suggestions gratefully received.
Chris Beeley
Institute of Mental Health, UK.
Output of the operation is below.
With this output:
> odfWeave("/media/Windows7/temp/GCAMT_in.odt",
"/media/Windows7/temp/GCAMT_out2.odt")
Copying /media/Windows7/temp/GCAMT_in.odt
Setting wd to /tmp/RtmpAwd1Bm/odfWeave12095551677
Unzipping ODF file using unzip -o GCAMT_in.odt
Archive: GCAMT_in.odt
extracting: mimetype
creating: Configurations2/statusbar/
inflating: Configurations2/accelerator/current.xml
creating: Configurations2/floater/
creating: Configurations2/popupmenu/
creating: Configurations2/progressbar/
creating: Configurations2/toolpanel/
creating: Configurations2/menubar/
creating: Configurations2/toolbar/
creating: Configurations2/images/Bitmaps/
inflating: content.xml
inflating: manifest.rdf
inflating: styles.xml
extracting: meta.xml
inflating: Thumbnails/thumbnail.png
inflating: settings.xml
inflating: META-INF/manifest.xml
Removing GCAMT_in.odt
Creating a Pictures directory
Pre-processing the contents
Sweaving content.Rnw
Writing to file content_1.xml
Processing code chunks ...
'content_1.xml' has been Sweaved
Removing content.xml
Post-processing the contents
Removing content.Rnw
Removing styles.xml
Renaming styles_2.xml to styles.xml
Removing manifest.xml
Renaming manifest_2.xml to manifest.xml
Removing extra files
Packaging file using zip -r GCAMT_in.odt .
adding: mimetype (stored 0%)
adding: content.xml (deflated 98%)
adding: settings.xml (deflated 84%)
adding: meta.xml (deflated 57%)
adding: META-INF/ (stored 0%)
adding: META-INF/manifest.xml (deflated 83%)
adding: styles.xml (deflated 93%)
adding: manifest.rdf (deflated 54%)
adding: Pictures/ (stored 0%)
adding: Thumbnails/ (stored 0%)
adding: Thumbnails/thumbnail.png (deflated 23%)
adding: Configurations2/ (stored 0%)
adding: Configurations2/progressbar/ (stored 0%)
adding: Configurations2/images/ (stored 0%)
adding: Configurations2/images/Bitmaps/ (stored 0%)
adding: Configurations2/toolbar/ (stored 0%)
adding: Configurations2/menubar/ (stored 0%)
adding: Configurations2/statusbar/ (stored 0%)
adding: Configurations2/popupmenu/ (stored 0%)
adding: Configurations2/accelerator/ (stored 0%)
adding: Configurations2/accelerator/current.xml (stored 0%)
adding: Configurations2/floater/ (stored 0%)
adding: Configurations2/toolpanel/ (stored 0%)
Copying GCAMT_in.odt
Resetting wd
Removing /tmp/RtmpAwd1Bm/odfWeave12095551677
Done