Anna-Leena Orsama
2011-May-03 06:09 UTC
[R] Comparison of two penalized spline fits in mixed model framework
Hello! I have faced a problem in nlme-environment. My intention is to fit a penalized spline model in mixed model framework. I want make a comparison in smooth curves between two groups but for some reason I get NaN in output.. Hereis the R-code I have used. #Z.overall is for truncated lines part knots <- seq(1.5,6.5,by=1) Z <- outer(weekday,knots,"-") Z.overall <- Z*(Z>0) fit1 <- lme(weight~group*weekday, random=list(group=pdIdent(~Z.overall-1))) summary(fit1) Linear mixed-effects model fit by REML Data: NULL AIC BIC logLik 4379.838 4411.895 -2183.919 Random effects: Formula: ~Z.overall - 1 | group Structure: Multiple of an Identity Z.overall1 Z.overall2 Z.overall3 Z.overall4 Z.overall5 Z.overall6 Residual StdDev: 0.1310617 0.1310617 0.1310617 0.1310617 0.1310617 0.1310617 0.9833188 Fixed effects: normMAweight2 ~ group * weekday Value Std.Error DF t-value p-value (Intercept) 0.23589909 0.4431604 1545 0.5323109 0.5946 group 0.14167744 0.2629714 0 0.5387562 NaN weekday -0.08601980 0.2770228 1545 -0.3105152 0.7562 group:weekday -0.02575775 0.1686222 1545 -0.1527542 0.8786 Correlation: (Intr) group weekdy group -0.957 weekday -0.911 0.883 group:weekday 0.861 -0.915 -0.953 Standardized Within-Group Residuals: Min Q1 Med Q3 Max -3.87210364 -0.64218983 -0.03839294 0.60534552 4.30615258 Number of Observations: 1549 Number of Groups: 2 Warning message: In pt(q, df, lower.tail, log.p) : NaNs produced Kindly Regards, Anna-Leena Orsama