I'm developing an R package, and when I recompile (using Roxygen), detach, and re-load the package, I can't seem to look at some of its documented functions. When I try '?function.name', I get the following error: Error in tools:::fetchRdDB(RdDB, basename(file)) : cannot allocate memory block of size 2.6 Gb I'm using R.app's built-in documentation viewer. I don't get the same error when I look at the docs for built-in functions, e.g. '?cos' works fine. Most of the .Rd files spit out by Roxygen are very simple, e.g. here's one that fails to be viewed, it has only 4 lines: in man/ndcg.Rd: \name{ndcg} \alias{ndcg} \title{ndcg} \usage{ndcg(pr, position=5, ...)} Anyone have any thoughts? Here's my R.version: _ platform i386-apple-darwin9.8.0 arch i386 os darwin9.8.0 system i386, darwin9.8.0 status major 2 minor 11.1 year 2010 month 05 day 31 svn rev 52157 language R version.string R version 2.11.1 (2010-05-31) Thanks. -Ken
Prof Brian Ripley
2010-Oct-08 16:32 UTC
[R] tools:::fetchRdDB can't allocate memory block?
On Fri, 8 Oct 2010, Ken Williams wrote:> I'm developing an R package, and when I recompile (using Roxygen), > detach, and re-load the package, I can't seem to look at some of its > documented functions. When I try '?function.name', I get the > following error: > > Error in tools:::fetchRdDB(RdDB, basename(file)) : > cannot allocate memory block of size 2.6 Gb > > I'm using R.app's built-in documentation viewer. > > I don't get the same error when I look at the docs for built-in > functions, e.g. '?cos' works fine. > > Most of the .Rd files spit out by Roxygen are very simple, e.g. here's > one that fails to be viewed, it has only 4 lines: > > in man/ndcg.Rd: > \name{ndcg} > \alias{ndcg} > \title{ndcg} > \usage{ndcg(pr, position=5, ...)} > > > Anyone have any thoughts?(1) Package development is an R-devel topic -- please see the posting guide. (2) Either the package has an enormous amount of documentation or (more likely) the on-disc .Rd database for the package is corrupt. Have you tried removing completely any previous installation and re-installing -- that usually fixes similar errors? (3) The 'minimal, self-contained, reproducible code' comment is likely to apply if (2) does not solve this.> Here's my R.version:Next time please give the information in the format the posting guide requested. [...]> version.string R version 2.11.1 (2010-05-31) > > > Thanks. > > -Ken-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595