Dear all, I share the problem Linda Garcia and Ram Kumar Basnet described; I have a biclust object, containing several clusters. For drawing a heatmap, it is possible to specify the cluster to be plotted. However, I'd like to extract the clusters in this manner: Cond.1 Cond.2 Gene - value - value just like drawHeatmap specifies each cluster. Is there a way to extract single clusters? E.g. like saying "Object at object3", meaning cluster no. 3 of my biclust object? Unfortunately, the given answers I found in older posts could'nt help me out... Any help is strongly appreciated! Best regards, Christine -- View this message in context: http://r.789695.n4.nabble.com/Extract-Clusters-from-Biclust-Object-tp2286066p2286066.html Sent from the R help mailing list archive at Nabble.com.
delfin13
2010-Jul-13 13:50 UTC
[R] Extract Clusters from Biclust Object - writeBiclusterResults
######################## Update: Solution ################################## Dear all, just in case someone has the same question: I found the method writeBiclusterResults. It prints the results of all modules together in one file, containing the gene names and array/experiment names. It does not contain the values, however, so these have to be parsed by yourself from the original data file. -- View this message in context: http://r.789695.n4.nabble.com/Extract-Clusters-from-Biclust-Object-tp2286066p2287441.html Sent from the R help mailing list archive at Nabble.com.