Hello everybody, I have a a matrix of 2 columns and over 27k rows. some of the rows are double , so I tried to remove them with the command unique():> Workbook5 <- read.delim(file = "Workbook5.txt") > dim(Workbook5)[1] 27748 2> Workbook5 <- unique(Workbook5) > dim(Workbook5)[1] 20101 2 it removed a lot of line, but unfortunately not all of them. I wanted to add the row names to the matrix and got this error message:> rownames(Workbook5) <- Workbook5[,1]Error in `row.names<-.data.frame`(`*tmp*`, value = c(1L, 2L, 3L, 4L, 5L, : duplicate 'row.names' are not allowed In addition: Warning message: non-unique values when setting 'row.names': ???A_51_P102339???, ???A_51_P102518???, ???A_51_P103435???, ???A_51_P103465???, ???A_51_P103594???, ???A_51_P104409???, ???A_51_P104718???, ???A_51_P105869???, ???A_51_P106428???, ???A_51_P106799???, ???A_51_P107176???, ???A_51_P107959???, ???A_51_P108767???, ???A_51_P109258???, ???A_51_P109708???, ???A_51_P110341???, ???A_51_P111757???, ???A_51_P112427???, ???A_51_P112662???, ???A_51_P113672???, ???A_51_P115018???, ???A_51_P116496???, ???A_51_P116636???, ???A_51_P117666???, ???A_51_P118132???, ???A_51_P118168???, ???A_51_P118400???, ???A_51_P118506???, ???A_51_P119315???, ???A_51_P120093???, ???A_51_P120305???, ???A_51_P120738???, ???A_51_P120785???, ???A_51_P121134???, ???A_51_P121359???, ???A_51_P121412???, ???A_51_P121652???, ???A_51_P121724???, ???A_51_P121829???, ???A_51_P122141???, ???A_51_P122964???, ???A_51_P123422???, ???A_51_P123895???, ???A_51_P124008???, ???A_51_P124719???, ???A_51_P125648???, ???A_51_P125679???, ???A_51_P125779? [... truncated] Is there a better way to discard the duplicataions in the text file (Excel file is the origin).> R.version_ platform x86_64-apple-darwin9.8.0 arch x86_64 os darwin9.8.0 system x86_64, darwin9.8.0 status Patched major 2 minor 11.1 year 2010 month 06 day 03 svn rev 52201 language R version.string R version 2.11.1 Patched (2010-06-03 r52201) THX Assa -------------- next part -------------- ProbeID Transcript ID A_51_P100034 NM_027162.3 A_51_P100052 NM_198863.1 A_51_P100174 NM_008613.2 A_51_P100218 NM_134198.1 A_51_P100227 NM_023579.4 A_51_P100227 NM_023579.4 A_51_P100238 NM_146376.2 A_51_P100298 NM_152220.1 A_51_P100309 NM_001039652.1 A_51_P100327 NM_013683.1 A_51_P100379 NM_177596.3 A_51_P100537 NM_175020.3 A_51_P100573 NM_011947.3 A_51_P100624 NM_029351.2 A_51_P100625 NM_133996.3 A_51_P100768 XM_001472513.1 A_51_P100787 NM_025507.2 A_51_P100787 NM_025507.2 A_51_P100828 NM_007452.2 A_51_P100852 NM_175449.3 A_51_P100856 NM_010233.1 A_51_P100856 NM_010233.1 A_51_P100856 NM_010233.1 A_51_P100866 NM_016755.2 A_51_P100997 NM_201363.2 A_51_P101022 NM_146822.1 A_51_P101065 NM_008315.2 A_51_P101075 NM_026977.2 A_51_P101075 NM_026977.2 A_51_P101086 NM_027007.2 A_51_P101137 NM_146025.2 A_51_P101196 NM_011189.1 A_51_P101228 NM_198169.2 A_51_P101228 NM_198169.2 A_51_P101255 NM_027896.4 A_51_P101317 NM_133740.2 A_51_P101317 NM_133740.2 A_51_P101388 NM_015748.2 A_51_P101474 NM_015799.3 A_51_P101545 NM_019447.2 A_51_P101573 NM_029091.2 A_51_P101588 NM_025629.2 A_51_P101763 NM_007727.1 A_51_P101777 NM_026101.2 A_51_P101777 NM_026101.2 A_51_P101950 NM_147103.1 A_51_P101955 XR_034510.1 A_51_P101975 NM_010205.1 A_51_P102005 NM_148951.1 A_51_P102096 NM_010849.4 A_51_P102096 NM_010849.4 A_51_P102096 NM_010849.4 A_51_P102106 NM_146364.1 A_51_P102122 NM_031189.2 A_51_P102235 NM_011049.4 A_51_P102235 NM_011049.4 A_51_P102311 NM_011661.4 A_51_P102339 NM_011705.3 A_51_P102339 NM_001029844.1 A_51_P102339 NM_001029843.1 A_51_P102339 NM_011705.3 A_51_P102339 NM_001029844.1 A_51_P102339 NM_001029843.1 A_51_P102355 NM_172643.5 A_51_P102393 XM_001471847.1 A_51_P102421 NM_019952.3 A_51_P102438 NM_001029867.1 A_51_P102459 NM_020605.2 A_51_P102503 NM_175224.4 A_51_P102507 NM_029929.2 A_51_P102507 NM_029929.2 A_51_P102518 XM_916123.2 A_51_P102518 XM_134639.3 A_51_P102538 NM_172709.3 A_51_P102789 NM_007574.2 A_51_P102911 NM_010450.2 A_51_P103000 NM_008851.3 A_51_P103054 NM_175506.3 A_51_P103054 NM_175506.3 A_51_P103209 NM_028639.2 A_51_P103209 NM_028639.2 A_51_P103222 NM_028064.2 A_51_P103254 NM_201518.2 A_51_P103261 NM_009198.2 A_51_P103298 NM_001081329.1 A_51_P103328 NM_172888.2 A_51_P103364 XM_917510.3 A_51_P103397 NM_011708.3 A_51_P103397 NM_011708.3 A_51_P103435 XM_906805.2 A_51_P103435 XM_137041.6 A_51_P103450 NM_001080709.1 A_51_P103465 XM_357746.5 A_51_P103465 XM_001474467.1 A_51_P103499 NM_025721.2 A_51_P103509 NM_019720.4 A_51_P103533 NM_001081109.1 A_51_P103533 NM_001081109.1 A_51_P103594 XM_911116.3 A_51_P103594 XM_125627.6 A_51_P103659 NM_009450.1 A_51_P103745 NM_010075.1 A_51_P103757 NM_026370.1 A_51_P103780 NM_145512.3 A_51_P103780 NM_145512.3 A_51_P103850 XM_001473415.1 A_51_P103912 NM_013596.2 A_51_P103975 NM_027430.2 A_51_P104012 NM_001002267.2 A_51_P104077 NM_001013024.2 A_51_P104125 NM_176836.3 A_51_P104125 NM_176836.3 A_51_P104187 NM_009460.2 A_51_P104197 NM_153803.1 A_51_P104258 NM_146647.1 A_51_P104290 NM_019931.1 A_51_P104392 NM_133982.1 A_51_P104409 XM_914601.3 A_51_P104409 XM_144060.5 A_51_P104418 NM_022019.5 A_51_P104430 NM_053201.3 A_51_P104478 NM_025357.1 A_51_P104527 NM_172774.2 A_51_P104569 NM_146505.1 A_51_P104569 NM_146505.1 A_51_P104608 NM_030098.1 A_51_P104670 NM_013481.1 A_51_P104681 NM_130856.2 A_51_P104687 NM_008117.2 A_51_P104718 NM_008151.3 A_51_P104718 NM_001010941.2 A_51_P104718 NM_008151.3 A_51_P104718 NM_001010941.2 A_51_P104727 NM_153078.2 A_51_P104747 NM_010364.3 A_51_P104786 NM_031255.1 A_51_P104786 NM_031255.1 A_51_P104802 NM_181074.4 A_51_P104861 NM_175334.3 A_51_P104891 NM_027652.2 A_51_P104891 NM_027652.2 A_51_P104891 NM_027652.2 A_51_P104897 NM_080553.3 A_51_P104933 NM_145520.3 A_51_P104953 NM_173368.2 A_51_P104953 NM_173368.2 A_51_P104953 NM_173368.2 A_51_P104953 NM_173368.2 A_51_P104960 NM_008947.3 A_51_P105000 NM_001011800.2 A_51_P105068 NM_027990.3 A_51_P105078 NM_011311.1 A_51_P105124 NM_183168.1 A_51_P105161 NM_028719.1 A_51_P105161 NM_028719.1 A_51_P105263 NM_201355.3 A_51_P105292 NM_173765.2 A_51_P105292 NM_173765.2 A_51_P105292 NM_173765.2 A_51_P105320 NM_029632.2 A_51_P105339 NM_172609.3 A_51_P105380 NM_029733.3 A_51_P105480 NM_194059.2 A_51_P105520 NM_153057.3 A_51_P105589 NM_010023.3 A_51_P105604 NM_133826.4 A_51_P105604 NM_133826.4 A_51_P105709 NM_027182.2 A_51_P105810 NM_148928.2 A_51_P105822 NM_172831.2 A_51_P105837 NM_010828.2 A_51_P105837 NM_010828.2 A_51_P105837 NM_010828.2 A_51_P105847 NM_001102607.1 A_51_P105869 NM_028141.3 A_51_P105869 NM_001111029.1 A_51_P105887 NM_172842.2 A_51_P105927 NM_001033158.1 A_51_P105986 NM_009304.1 A_51_P105991 NM_011538.2 A_51_P106144 NM_009564.2 A_51_P106227 NM_011966.3 A_51_P106227 NM_011966.3 A_51_P106249 NM_028524.2 A_51_P106263 NM_133926.2 A_51_P106263 NM_133926.2 A_51_P106269 NM_021349.1 A_51_P106294 NM_010292.4 A_51_P106322 NM_134116.4 A_51_P106373 NM_025321.2 A_51_P106428 XM_917462.3 A_51_P106428 XM_133876.7 A_51_P106455 NM_007430.4 A_51_P106488 NM_001085371.1 A_51_P106527 NM_026633.3 A_51_P106634 NM_008205.1 A_51_P106799 NM_011146.3 A_51_P106799 NM_001127330.1 A_51_P106859 NM_138721.1 A_51_P106868 NM_013901.2 A_51_P107053 NM_198623.2 A_51_P107066 NM_028792.3 A_51_P107090 NM_001001181.3 A_51_P107140 NM_016880.1 A_51_P107176 XM_910494.2 A_51_P107176 XM_131087.4 A_51_P107234 NM_013854.1 A_51_P107234 NM_013854.1 A_51_P107265 NM_019718.2 A_51_P107282 NM_181516.4 A_51_P107302 NM_007616.3 A_51_P107302 NM_007616.3 A_51_P107326 NM_024188.6 A_51_P107326 NM_024188.6 A_51_P107326 NM_024188.6 A_51_P107362 NM_007706.3 A_51_P107378 NM_026067.3 A_51_P107378 NM_026067.3 A_51_P107378 NM_026067.3 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NM_029602.1 A_51_P110938 NM_172803.2 A_51_P110938 NM_172803.2 A_51_P111003 NM_025722.2 A_51_P111003 NM_025722.2 A_51_P111068 NM_146734.1 A_51_P111094 NM_177865.4 A_51_P111094 NM_177865.4 A_51_P111143 NM_053102.2 A_51_P111164 NM_172612.3 A_51_P111223 NM_147094.1 A_51_P111245 NM_172262.1 A_51_P111259 NM_026373.4 A_51_P111462 NM_172595.4 A_51_P111462 NM_172595.4 A_51_P111488 NM_027469.4 A_51_P111532 NM_177823.4 A_51_P111544 NM_009273.4 A_51_P111562 NM_177620.3 A_51_P111583 NM_009319.2 A_51_P111612 NM_001042592.2 A_51_P111655 NM_175692.3 A_51_P111655 NM_175692.3 A_51_P111655 NM_175692.3 A_51_P111655 NM_175692.3 A_51_P111655 NM_175692.3 A_51_P111757 NM_023046.4 A_51_P111757 NM_001039126.2 A_51_P111757 NM_023046.4 A_51_P111757 NM_001039126.2 A_51_P111796 NM_026490.2 A_51_P111796 NM_026490.2 A_51_P111902 NM_021551.3 A_51_P111936 NM_022329.3 A_51_P111936 NM_022329.3 A_51_P112182 NM_172455.2 A_51_P112203 NM_026789.2 A_51_P112223 NM_010357.3 A_51_P112237 NM_144524.2 A_51_P112308 NM_026931.2 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Your process does remove all the duplicate entries based on the content of the two columns. After you do this, there are still duplicate entries in the first column that you are trying to use as rownames and therefore the error. Why to you want to use non-unique entries as rownames? Do you really need the row names, or should you only be keeping unique values for the first column? On Mon, Jun 14, 2010 at 8:54 AM, Assa Yeroslaviz <frymor at gmail.com> wrote:> Hello everybody, > > I have a a matrix of 2 columns and over 27k rows. > some of the rows are double , so I tried to remove them with the command > unique(): > >> Workbook5 <- read.delim(file = ?"Workbook5.txt") >> dim(Workbook5) > [1] 27748 ? ? 2 >> Workbook5 <- unique(Workbook5) >> dim(Workbook5) > [1] 20101 ? ? 2 > > it removed a lot of line, but unfortunately not all of them. I wanted to add > the row names to the matrix and got this error message: >> rownames(Workbook5) <- Workbook5[,1] > Error in `row.names<-.data.frame`(`*tmp*`, value = c(1L, 2L, 3L, 4L, 5L, ?: > ?duplicate 'row.names' are not allowed > In addition: Warning message: > non-unique values when setting 'row.names': ???A_51_P102339???, > ???A_51_P102518???, ???A_51_P103435???, ???A_51_P103465???, > ???A_51_P103594???, ???A_51_P104409???, ???A_51_P104718???, > ???A_51_P105869???, ???A_51_P106428???, ???A_51_P106799???, > ???A_51_P107176???, ???A_51_P107959???, ???A_51_P108767???, > ???A_51_P109258???, ???A_51_P109708???, ???A_51_P110341???, > ???A_51_P111757???, ???A_51_P112427???, ???A_51_P112662???, > ???A_51_P113672???, ???A_51_P115018???, ???A_51_P116496???, > ???A_51_P116636???, ???A_51_P117666???, ???A_51_P118132???, > ???A_51_P118168???, ???A_51_P118400???, ???A_51_P118506???, > ???A_51_P119315???, ???A_51_P120093???, ???A_51_P120305???, > ???A_51_P120738???, ???A_51_P120785???, ???A_51_P121134???, > ???A_51_P121359???, ???A_51_P121412???, ???A_51_P121652???, > ???A_51_P121724???, ???A_51_P121829???, ???A_51_P122141???, > ???A_51_P122964???, ???A_51_P123422???, ???A_51_P123895???, > ???A_51_P124008???, ???A_51_P124719???, ???A_51_P125648???, > ???A_51_P125679???, ???A_51_P125779? [... truncated] > > Is there a better way to discard the duplicataions in the text file (Excel > file is the origin). > >> R.version > ? ? ? ? ? ? ? _ > platform ? ? ? x86_64-apple-darwin9.8.0 > arch ? ? ? ? ? x86_64 > os ? ? ? ? ? ? darwin9.8.0 > system ? ? ? ? x86_64, darwin9.8.0 > status ? ? ? ? Patched > major ? ? ? ? ?2 > minor ? ? ? ? ?11.1 > year ? ? ? ? ? 2010 > month ? ? ? ? ?06 > day ? ? ? ? ? ?03 > svn rev ? ? ? ?52201 > language ? ? ? R > version.string R version 2.11.1 Patched (2010-06-03 r52201) > > THX > > Assa > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > >-- Jim Holtman Cincinnati, OH +1 513 646 9390 What is the problem that you are trying to solve?