R help - Jun 2010 - Installing packages from folder on the computer

i am able to install zip files of packages from local zip files using the
file.choose() for the package argument in install.packages() function in R
console and also from the Packages menu>install from local zip files. But
if there are many packages to install (say >15 or 20), then i have to factor
in dependencies of 15-20 packages which may be more than 100 or 200 packages
in all to be installed. i'd have to go and choose so many of them.

so, i want a command line solution.

here is what i tried:

following the CRAN Miror's hierarchy of the directory where package zip
files are, i have put zip files of packages in:
C:\R\packages\bin\windows\contrib\2.11

To set this folder as my Mirror to install packages from, in Rprofile.site i
replaced "http://my.local.cran"  with
"file://C:/R/packages/" (full code
given below) and then in R console i enter:

install.packages(c("pkg1", "pkg2", ...),dependencies=TRUE)

but dint succeed.

Error message: Warning in gzfile(file, "r") :
  cannot open compressed file
'//C:/R/packages/bin/windows/contrib/2.11/PACKAGES', probable reason
'No
such file or directory'
Error in gzfile(file, "r") : cannot open the connection

# code in Rprofile.site to set a CRAN mirror
 local({r <- getOption("repos")
      r["CRAN"] <- "http://my.local.cran/"
       options(repos=r)})


have changed this to:

 local({r <- getOption("repos")
      r["CRAN"] <- "file://C:/R/packages/"
       options(repos=r)})

Pls help.

	[[alternative HTML version deleted]]

On 22.06.2010 19:30, Subramanian S wrote:
> i am able to install zip files of packages from local zip files using the
> file.choose() for the package argument in install.packages() function in R
> console and also from the Packages menu>install from local zip files.
But
> if there are many packages to install (say>15 or 20), then i have to
factor
> in dependencies of 15-20 packages which may be more than 100 or 200
packages
> in all to be installed. i'd have to go and choose so many of them.
>
> so, i want a command line solution.
>
> here is what i tried:
>
> following the CRAN Miror's hierarchy of the directory where package zip
> files are, i have put zip files of packages in:
> C:\R\packages\bin\windows\contrib\2.11
>
> To set this folder as my Mirror to install packages from, in Rprofile.site
i
> replaced "http://my.local.cran"  with
"file://C:/R/packages/" (full code
> given below) and then in R console i enter:
>
> install.packages(c("pkg1", "pkg2",
...),dependencies=TRUE)
>
> but dint succeed.
>
> Error message: Warning in gzfile(file, "r") :
>    cannot open compressed file
> '//C:/R/packages/bin/windows/contrib/2.11/PACKAGES', probable
reason 'No
> such file or directory'
A CRAN style repository needs a PACKAGES file that is used by R to load 
the database of available packages within that repository.
Such a file can be created by function write_PACKAGES() in package tools.

Best,
Uwe Ligges


> Error in gzfile(file, "r") : cannot open the connection
>
> # code in Rprofile.site to set a CRAN mirror
>   local({r<- getOption("repos")
>        r["CRAN"]<- "http://my.local.cran/"
>         options(repos=r)})
>
>
> have changed this to:
>
>   local({r<- getOption("repos")
>        r["CRAN"]<- "file://C:/R/packages/"
>         options(repos=r)})
>
> Pls help.
>
> 	[[alternative HTML version deleted]]
>
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