R help - Dec 2009 - automated image processing

Hi,

I am looking for a R package which is capable to process and analysis pictures
of tissues (stained) in an automatic way.

I had a look on biops and EBImage (Bioconductor) but they are not automatic...

Did you already use/know a such package ?

Thanks,

- Martial 
 		 	   		  
_________________________________________________________________
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Hi,

Depending on what you want to do, the RImageJ package might be for you.
It is a very simple wrapper around ImageJ: http://rsbweb.nih.gov/ij/

Romain

On 12/08/2009 11:40 AM, Martial Sankar wrote:
>
> Hi,
>
> I am looking for a R package which is capable to process and analysis
pictures of tissues (stained) in an automatic way.
>
> I had a look on biops and EBImage (Bioconductor) but they are not
automatic...
>
> Did you already use/know a such package ?
>
> Thanks,
>
> - Martial
-- 
Romain Francois
Professional R Enthusiast
+33(0) 6 28 91 30 30
http://romainfrancois.blog.free.fr
|- http://tr.im/Gq7i : ohloh
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Hello Martial,

Cell segmentation is not easy in many cases. Cells may overlap and 
contain complex structures such as organelles or cytoskeletal fibers 
that hinder the determination of cell membranes.

There is no one-size-fits-all algorithm that can process and analyse 
cellular tissues in an automatic way. It really depends on your cells 
and stains.

The package EBImage provides general purpose functionality
for reading, writing, processing and analysis of images. EBImage 
documentation contains an example on how to segment, quantify and 
classify HeLa cells in different states:
http://www.bioconductor.org/packages/release/bioc/html/EBImage.html

Hope this will help,

Greg
---
Gregoire Pau
EMBL Research Officer
http://www.ebi.ac.uk/~gpau/


Martial Sankar wrote:
> Hi,
> 
> I am looking for a R package which is capable to process and analysis
pictures of tissues (stained) in an automatic way.
> 
> I had a look on biops and EBImage (Bioconductor) but they are not
automatic...
> 
> Did you already use/know a such package ?
> 
> Thanks,
> 
> - Martial 
>  		 	   		  
> _________________________________________________________________
> Tchattez en direct en en vid?o avec vos amis !  
> 
> 	[[alternative HTML version deleted]]
> 
> 
> 
> ------------------------------------------------------------------------
> 
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