Hi,
I'm having trouble running a script within winbugs when calling winbugs from
R.
Here are a few lines from the winbugs log:
display(log)
check(C:\DOCUME~1\michael\LOCALS~1\Temp\RtmpjKnHMu\mm_TO_bugs9bc21e.txt)
cannot open
C:\DOCUME~1\michael\LOCALS~1\Temp\RtmpjKnHMu\mm_TO_bugs9bc21e.txt
data(C:/DOCUME~1/michael/LOCALS~1/Temp/RtmpjKnHMu/data.txt)
command #Bugs:data cannot be executed (is greyed out)
...
Winbugs tries to check the mm_TO_bugs9bc21e.txt file but somehow it can't
and so it can't execute the rest of the commands. The file does exist. If
the path is pasted into windows explorer it opens nicely.
Here's the R script as well:
library(mixstock)
library(R2WinBUGS)
mydata <- read.table("C:/turtles/temp.txt")
mydata<-as.mixstock.data(mydata,4)
mydataC<-markfreq.condense(mydata)
m2m<-mm.wbugs(mydataC, n.iter=1000,n.chains=4,debug=TRUE)
Does anyone have a guess as to why the "mm_TO_bugs9bc21e.txt"
won't open?
Best,
Johannes
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dolberdinho wrote:> > Hi, > > I'm having trouble running a script within winbugs when calling winbugs > from R. > Here are a few lines from the winbugs log: > > display(log) > check(C:\DOCUME~1\michael\LOCALS~1\Temp\RtmpjKnHMu\mm_TO_bugs9bc21e.txt) > cannot open > C:\DOCUME~1\michael\LOCALS~1\Temp\RtmpjKnHMu\mm_TO_bugs9bc21e.txt > data(C:/DOCUME~1/michael/LOCALS~1/Temp/RtmpjKnHMu/data.txt) > command #Bugs:data cannot be executed (is greyed out) > ... > > Winbugs tries to check the mm_TO_bugs9bc21e.txt file but somehow it can't > and so it can't execute the rest of the commands. The file does exist. If > the path is pasted into windows explorer it opens nicely. > > Here's the R script as well: > library(mixstock) > library(R2WinBUGS) > mydata <- read.table("C:/turtles/temp.txt") > mydata<-as.mixstock.data(mydata,4) > mydataC<-markfreq.condense(mydata) > m2m<-mm.wbugs(mydataC, n.iter=1000,n.chains=4,debug=TRUE) > > Does anyone have a guess as to why the "mm_TO_bugs9bc21e.txt" won't open? > >Dear Johannes, I think there is a *chance* that this problem comes from a total path length being too long ... this is an issue I may have seen before (but can't remember at the moment exactly what the issue was). Is there any chance you can send me your data & script files (bolker AT ufl.edu )? Ben Bolker -- View this message in context: http://www.nabble.com/Connecting-to-winbugs-from-R-tp26034409p26035875.html Sent from the R help mailing list archive at Nabble.com.